Gene EcHS_A3323 details

Gene Information

• Locus tag: EcHS_A3323
• Symbol: agaV
• ID: 5594474
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3328837
• End bp: 3329310
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640922441
• Product: PTS system N-acetylgalactosamine-specific transporter subunit IIB
• Protein accession: YP_001459934
• Protein GI: 157162616
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
• TIGRFAM ID: [TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component

Plasmid Coverage information

• Num covering plasmid clones: 65
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAATA TTGTTTTAAG CCGGATTGAT GAACGCTTGA TTCACGGTCA GGTCGGCGTT 
CAATGGGTCG GATTTGCGGG GGCAAATCTG GTGCTGGTAG CCAACGATGA GGTTGCCGAA 
GATCCGGTAC AACAAAACCT GATGGAAATG GTACTGGCAG AAGGGATCGC CGTACGTTTC 
TGGACGCTGC AAAAAGTTAT CGACAACATT CATCGCGCCG CCGATCGACA GAAAATCCTG 
CTGGTTTGTA AAACACCCGC CGATTTCCTG ACGCTGGTGA AAGGTGGCGT TCCGGTGAAT 
CGCATTAACG TTGGCAATAT GCACTACGCC AATGGCAAAC AACAAATCGC CAAAACGGTT 
TCTGTGGATG CGGGCGATAT CGCAGCATTT AACGACCTGA AAGCCGCTGG GGTGGAATGC 
TTCGTTCAGG GCGTCCCGAC AGAGCCTGCT GTGGACCTCT TTAAATTACT TTGA 

 

Protein sequence

MPNIVLSRID ERLIHGQVGV QWVGFAGANL VLVANDEVAE DPVQQNLMEM VLAEGIAVRF 
WTLQKVIDNI HRAADRQKIL LVCKTPADFL TLVKGGVPVN RINVGNMHYA NGKQQIAKTV 
SVDAGDIAAF NDLKAAGVEC FVQGVPTEPA VDLFKLL