| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A2894 |
|---|
| Symbol | cas1 |
|---|
| ID | 5592173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 2896088 |
|---|
| End bp | 2897005 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640922011 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_001459522 |
|---|
| Protein GI | 157162204 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTGGC TTCCTCTTAA CCCCATTCCA CTCAAAGATC GCGTCTCCAT GATCTTTCTG
CAATATGGGC AGATCGATGT AATAGATGGC GCGTTTGTAC TTATCGACAA GACAGGGATC
CGCACTCATA TTCCTGTTGG CTCGGTTGCC TGCATCATGC TGGAACCTGG TACACGGGTT
TCGCATGCAG CTGTACGCTT GGCTGCGCAA GTTGGAACAT TGTTGGTATG GGTGGGGGAA
GCGGGCGTTC GTGTTTATGC TTCTGGTCAG CCTGGTGGTG CGCGTTCAGA TAAGCTGCTC
TACCAGGCAA AACTTGCTCT GGATGAAGAT TTGCGTCTGA AGGTAGTACG CAAAATGTTT
GAACTTCGGT TTGGTGAACC TGCGCCCGCC CGACGCTCCG TAGAACAACT CAGAGGTATA
GAAGGAAGCC GTGTGCGAGC AACTTATGCA CTTCTGGCGA AGCAATACGG GGTGACATGG
AATGGACGTC GTTACGATCC GAAAGACTGG GAAAAGGGCG ATACGGTCAA CCAATGCATT
AGCGCTGCAA CTTCCTGTTT ATACGGCGTA ACTGAAGCGG CGATACTTGC AGCTGGTTAT
GCACCAGCTA TTGGGTTTGT GCATACAGGA AAGCCTCTTT CCTTTGTTTA CGATATCGCG
GACATCATTA AATTTGACAC TGTTGTACCG AAAGCTTTTG AGATAGCGCG TTGTAATCCT
GGTGAGCCGG ACCGGGAAGT CCGTTTGGCG TGCAGGGATA TTTTTCGCAG TAGTAAAACA
TTAGCCAAAT TGATTCCGCT TATAGAGGAC GTGCTTGCTG CTGGAGAAAT ACAACCGCCG
GCCCCACCTG AAGATGCACA GCCTGTTGCC ATTCCGCTTC CTGTTTCACT GGGAGATGCA
GGCCATCGGA GTAGCTGA
|
|---|
| Protein sequence | MAWLPLNPIP LKDRVSMIFL QYGQIDVIDG AFVLIDKTGI RTHIPVGSVA CIMLEPGTRV
SHAAVRLAAQ VGTLLVWVGE AGVRVYASGQ PGGARSDKLL YQAKLALDED LRLKVVRKMF
ELRFGEPAPA RRSVEQLRGI EGSRVRATYA LLAKQYGVTW NGRRYDPKDW EKGDTVNQCI
SAATSCLYGV TEAAILAAGY APAIGFVHTG KPLSFVYDIA DIIKFDTVVP KAFEIARCNP
GEPDREVRLA CRDIFRSSKT LAKLIPLIED VLAAGEIQPP APPEDAQPVA IPLPVSLGDA
GHRSS
|
|---|
| |