Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A2015 |
Symbol | sdiA |
ID | 5593367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 2015737 |
End bp | 2016459 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640921161 |
Product | DNA-binding transcriptional activator SdiA |
Protein accession | YP_001458706 |
Protein GI | 157161388 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0000284169 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGGATA CGGATTTTTT CAGCTGGCGT CGCACGATGC TGTTGCGTTT TCAGAGGATG GAGGCCGCAG AAGAGGTCTA CCATGAAATA GAGCTTCAGG CTCAGCAGCT AGAGTACGAT TACTATTCGT TATGTGTTCG CCACCCGGTA CCATTCACGC GACCTAAAGT GGCTTTCTAC ACCAATTACC CTGAGGCGTG GGTTAGTTAT TATCAGGCAA AAAACTTTCT CGCAATTGAT CCGGTGCTGA ACCCTGAAAA CTTTAGTCAG GGCCATTTAA TGTGGAATGA TGACTTATTC AGCGAAGCAC AGCCGTTATG GGAAGCCGCG CGCGCACATG GTTTACGCCG CGGTGTCACT CAGTATTTAA TGCTGCCAAA CCGGGCGCTG GGCTTTTTGT CCTTTTCCCG TAGCAGCGCG CGCGAAATAC CCATTCTTAG TGATGAACTG CAATTAAAAA TGCAGTTACT GGTGCGCGAA AGTCTGATGG CTCTGATGCG TTTAAATGAT GAAATAGTGA TGACGCCAGA GATGAATTTC AGCAAGCGCG AAAAAGAAAT TTTGAAATGG ACGGCGGAAG GGAAGACATC AGCAGAGATA GCGATGATTT TGTCAATCTC TGAGAATACG GTCAATTTCC ATCAGAAAAA CATGCAGAAA AAAATCAATG CACCGAATAA GACCCAGGTT GCCTGTTACG CGGCCGCTAC TGGCTTAATT TGA
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Protein sequence | MQDTDFFSWR RTMLLRFQRM EAAEEVYHEI ELQAQQLEYD YYSLCVRHPV PFTRPKVAFY TNYPEAWVSY YQAKNFLAID PVLNPENFSQ GHLMWNDDLF SEAQPLWEAA RAHGLRRGVT QYLMLPNRAL GFLSFSRSSA REIPILSDEL QLKMQLLVRE SLMALMRLND EIVMTPEMNF SKREKEILKW TAEGKTSAEI AMILSISENT VNFHQKNMQK KINAPNKTQV ACYAAATGLI
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