Gene EcHS_A1850 details

Gene Information

• Locus tag: EcHS_A1850
• Symbol: sppA
• ID: 5591434
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 1866919
• End bp: 1868775
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640920994
• Product: protease 4
• Protein accession: YP_001458546
• Protein GI: 157161228
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.0115674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAACCC TTTGGCGATT TATTGCCGGA TTTTTTAAAT GGACGTGGCG TCTGCTGAAT 
TTCGTCCGTG AAATGGTACT TAACCTGTTC TTTATTTTCC TCGTACTGGT TGGTGTGGGG 
ATTTGGATGC AGGTCAGTGG TGGTGATTCG AAAGAAACGG CCAGTCGTGG CGCACTGCTG 
CTGGACATTT CTGGTGTGAT CGTCGATAAA CCCGACAGTT CTCAGCGGTT TAGTAAATTA 
AGCCGCCAGC TGCTTGGTGC CAGTTCCGAT CGTCTGCAGG AAAACTCACT GTTTGATATC 
GTCAACACTA TTCGCCAGGC GAAGGACGAC CGCAATATCA CCGGTATTGT GATGGATCTG 
AAAAACTTCG CAGGCGGCGA CCAACCGTCT ATGCAGTACA TCGGCAAAGC TCTGAAAGAG 
TTTCGTGACA GTGGGAAACC GGTTTATGCC GTTGGCGAGA ACTACAGCCA GGGGCAATAT 
TATCTCGCCA GTTTCGCCAA TAAAATTTGG CTGTCTCCGC AAGGCGTGGT TGATCTGCAC 
GGCTTTGCCA CCAACGGTCT GTACTACAAA TCGTTGCTGG ATAAGCTGAA AGTTTCCACC 
CATGTGTTCC GCGTGGGTAC GTATAAATCT GCCGTTGAAC CGTTTATTCG TGATGATATG 
TCACCGGCAG CCCGCGAAGC TGACAGCCGC TGGATTGGTG AGCTGTGGCA AAACTATCTG 
AATACTGTTG CCGCTAACCG GCAGATCCCT GCTGAGCAGG TATTCCCTGG CGCGCAAGGG 
TTGCTTGAGG GTTTAACCAA AACCGGTGGC GATACCGCGA AATATGCACT GGAAAACAAG 
CTGGTCGATG CACTGGCATC GAGTGCGGAA ATCGAAAAAG CACTGACCAA AGAATTCGGC 
TGGAGTAAGA CTGATAAAAA TTATCGCGCC ATCAGTTATT ACGATTACGC ATTGAAAACG 
CCGGCAGATA CCGGTGACAG CATCGGTGTC GTCTTTGCTA ATGGCGCAAT TATGGATGGC 
GAGGAAACTC AGGGGAATGT TGGCGGTGAT ACCACTGCGG CACAAATCCG CGACGCTCGC 
CTTGACCCGA AAGTGAAAGC GATTGTCCTG CGTGTTAATA GCCCAGGCGG CAGCGTTACC 
GCGTCTGAAG TGATTCGCGC TGAACTGGCA GCAGCCCGGG CAGCGGGTAA GCCTGTGGTT 
GTATCGATGG GCGGCATGGC GGCATCTGGT GGTTACTGGA TTTCCACGCC AGCTAATTAC 
ATTGTGGCTA ACCCCAGCAC CCTGACCGGT TCTATCGGTA TCTTCGGCGT GATCACCACC 
GTAGAAAATA GTCTGGATTC GATTGGTGTT CATACCGATG GTGTCTCAAC TTCACCGCTG 
GCAGATGTTT CTATCACCAG GGCACTGCCG CCGGAAGCAC AGCAGATGAT GCAGTTAAGC 
ATTGAGAATG GCTATAAACG CTTTATCACG CTGGTTGCTG ATGCGCGTCA TTCGACGCCG 
GAGCAGATTG ATAAAATCGC CCAGGGCCAC GTCTGGACCG GTCAGGATGC AAAAGCTAAC 
GGGCTGGTCG ATAGCCTCGG GGATTTCGAT GATGCAGTTG CCAAAGCAGC AGAGCTGGCA 
AAAGTGAAAC AGTGGCATCT GGAATACTAC GTTGATGAAC CGACCTTCTT CGACAAAGTG 
ATGGACAACA TGTCTGGTTC TGTCCGGGCA ATGTTGCCAG ATGCGTTCCA GGCCATGTTA 
CCTGCACCGC TGGCCTCGGT AGCCTCTACT GTTAAAAGTG AAAGCGACAA GCTGGCCGCG 
TTTAACGACC CACAAAACCG TTATGCGTTT TGCCTGACCT GCGCCAACGT GCGTTAA 

 

Protein sequence

MRTLWRFIAG FFKWTWRLLN FVREMVLNLF FIFLVLVGVG IWMQVSGGDS KETASRGALL 
LDISGVIVDK PDSSQRFSKL SRQLLGASSD RLQENSLFDI VNTIRQAKDD RNITGIVMDL 
KNFAGGDQPS MQYIGKALKE FRDSGKPVYA VGENYSQGQY YLASFANKIW LSPQGVVDLH 
GFATNGLYYK SLLDKLKVST HVFRVGTYKS AVEPFIRDDM SPAAREADSR WIGELWQNYL 
NTVAANRQIP AEQVFPGAQG LLEGLTKTGG DTAKYALENK LVDALASSAE IEKALTKEFG 
WSKTDKNYRA ISYYDYALKT PADTGDSIGV VFANGAIMDG EETQGNVGGD TTAAQIRDAR 
LDPKVKAIVL RVNSPGGSVT ASEVIRAELA AARAAGKPVV VSMGGMAASG GYWISTPANY 
IVANPSTLTG SIGIFGVITT VENSLDSIGV HTDGVSTSPL ADVSITRALP PEAQQMMQLS 
IENGYKRFIT LVADARHSTP EQIDKIAQGH VWTGQDAKAN GLVDSLGDFD DAVAKAAELA 
KVKQWHLEYY VDEPTFFDKV MDNMSGSVRA MLPDAFQAML PAPLASVAST VKSESDKLAA 
FNDPQNRYAF CLTCANVR