| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1723 |
|---|
| Symbol | sodC |
|---|
| ID | 5594888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 1746087 |
|---|
| End bp | 1746608 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640920871 |
|---|
| Product | superoxide dismutase |
|---|
| Protein accession | YP_001458427 |
|---|
| Protein GI | 157161109 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2032] Cu/Zn superoxide dismutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 0.335611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTT TTAGTCTGGC TATTCTGGCG CTGGTTGTTG CAACCGGCGC ACAAGCTGCC
AGTGAAAAAG TCGAGATGAA CCTCGTCACG TCGCAAGGGG TAGGGCAGTC AATTGGTAGC
GTCACCATTA CTGAAACCGA TAAAGGTCTG GAGTTTTCGC CCGATCTGAA AGCATTACCC
CCCGGTGAAC ATGGCTTCCA TATTCATGCC AAAGGAAGCT GCCAGCCAGC CACCAAAGAT
GGCAAAGCCA GCGCCGCGGA ATCCGCAGGC GGGCATCTTG ATCCACAAAA TACCGGTAAA
CATGAAGGGC CAGAAGGTGC CGGGCATTTA GGCGATCTGC CTGCACTGGT CGTCAATAAT
GACGGCAAAG CTACCGATGC CGTCATCGCG CCTCGTCTGA AATCACTGGA TGAAATCAAA
GACAAAGCGC TGATGGTCCA CGTTGGCGGC GATAATATGT CCGATCAACC TAAACCGCTG
GGCGGTGGCG GTGAACGCTA TGCCTGTGGT GTAATTAAGT AA
|
|---|
| Protein sequence | MKRFSLAILA LVVATGAQAA SEKVEMNLVT SQGVGQSIGS VTITETDKGL EFSPDLKALP
PGEHGFHIHA KGSCQPATKD GKASAAESAG GHLDPQNTGK HEGPEGAGHL GDLPALVVNN
DGKATDAVIA PRLKSLDEIK DKALMVHVGG DNMSDQPKPL GGGGERYACG VIK
|
|---|
| |