Gene EcHS_A1239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A1239 
SymbollolD 
ID5593094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp1240325 
End bp1241026 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content55% 
IMG OID640920399 
Productlipoprotein transporter ATP-binding subunit 
Protein accessionYP_001457961 
Protein GI157160643 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID[TIGR02211] lipoprotein releasing system, ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0000867827 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAGA TCCTGTTGCA ATGCGACAAC CTGTGCAAAC GCTATCAGGA AGGCAGTGTG 
CAAACCGATG TGCTGCACAA TGTCAGTTTC AGCGTCGGCG AAGGTGAAAT GATGGCGATC
GTCGGTAGCT CTGGTTCCGG TAAAAGTACC TTGCTGCACC TGCTGGGCGG GCTGGATACG
CCAACCTCCG GCGATGTGAT TTTTAATGGT CAGCCAATGA GCAAACTGTC GTCGGCAGCG
AAAGCTGAAC TGCGCAACCA GAAGCTGGGC TTTATTTATC AGTTTCACCA CCTGCTGCCG
GATTTTACCG CCCTGGAAAA CGTGGCTATG CCGCTGCTGA TTGGCAAGAA AAAGCCCGCT
GAAATCAACA GCCGTGCACT TGAGATGTTA AAAGCGGTGG GGCTGGATCA TCGTGCGAAT
CACCGCCCAT CTGAACTTTC TGGCGGCGAA CGCCAGCGTG TGGCGATTGC CCGTGCGCTG
GTGAATAACC CGCGCCTGGT ACTGGCGGAT GAACCTACCG GTAACCTCGA TGCGCGTAAC
GCCGACAGCA TCTTCCAGTT GCTTGGGGAA TTGAATCGCT TGCAGGGCAC CGCCTTCCTG
GTGGTTACTC ACGACCTGCA ACTGGCGAAA CGTATGAGCC GCCAGTTAGA AATGCGTGAT
GGTCGTCTGA CGGCGGAACT GAGCCTGATG GGGGCGGAGT AA
 
Protein sequence
MNKILLQCDN LCKRYQEGSV QTDVLHNVSF SVGEGEMMAI VGSSGSGKST LLHLLGGLDT 
PTSGDVIFNG QPMSKLSSAA KAELRNQKLG FIYQFHHLLP DFTALENVAM PLLIGKKKPA
EINSRALEML KAVGLDHRAN HRPSELSGGE RQRVAIARAL VNNPRLVLAD EPTGNLDARN
ADSIFQLLGE LNRLQGTAFL VVTHDLQLAK RMSRQLEMRD GRLTAELSLM GAE