Gene EcHS_A0871 details

Gene Information

• Locus tag: EcHS_A0871
• Symbol: ompX
• ID: 5594918
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 877053
• End bp: 877568
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640920043
• Product: outer membrane protein X
• Protein accession: YP_001457610
• Protein GI: 157160292
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens
• TIGRFAM ID: [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 0.00356643
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA TTGCATGTCT TTCAGCACTG GCCGCAGTTC TGGCTTTCAC CGCAGGTACT 
TCCGTAGCTG CGACTTCTAC TGTAACTGGC GGTTACGCAC AGAGCGACGC TCAGGGCCAA 
ATGAACAAAA TGGGCGGTTT CAACCTGAAA TACCGCTATG AAGAAGACAA CAGCCCGCTG 
GGTGTGATCG GTTCTTTCAC TTACACCGAG AAAAGCCGTA CTGCAAGCTC TGGTGACTAC 
AACAAAAACC AGTACTACGG CATCACTGCT GGTCCGGCTT ACCGCATTAA CGACTGGGCA 
AGCATCTACG GTGTAGTGGG TGTGGGTTAT GGTAAATTCC AGACCACTGA ATACCCGACC 
TACAAACACG ACACCAGCGA CTACGGTTTC TCCTACGGTG CGGGTCTGCA GTTCAACCCG 
ATGGAAAACG TTGCTCTGGA CTTCTCTTAC GAGCAGAGCC GTATTCGTAG CGTTGACGTA 
GGCACCTGGA TTGCCGGTGT TGGTTACCGC TTCTAA 

 

Protein sequence

MKKIACLSAL AAVLAFTAGT SVAATSTVTG GYAQSDAQGQ MNKMGGFNLK YRYEEDNSPL 
GVIGSFTYTE KSRTASSGDY NKNQYYGITA GPAYRINDWA SIYGVVGVGY GKFQTTEYPT 
YKHDTSDYGF SYGAGLQFNP MENVALDFSY EQSRIRSVDV GTWIAGVGYR F