| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0607 |
|---|
| Symbol | fimD2 |
|---|
| ID | 5591969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 619228 |
|---|
| End bp | 621837 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640919791 |
|---|
| Product | outer membrane usher protein fimD |
|---|
| Protein accession | YP_001457374 |
|---|
| Protein GI | 157160056 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.0594926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC CCACTACTAC GGATATTCCG CAGAGGTATA CCTGGTGTCT GGCCGGAATT
TGTTATTCAT CTCTTGCCAT TTTACCCTCC TTTTTAAGCT ATGCGGAAAG TTATTTCAAC
CCGGCATTTT TATTAGAGAA TGGCACATCC GTTGCTGATT TATCGCGCTT TGAGAGAGGT
AATCATCAAC CTGCGGGCGT GTATCGGGTA GATCTCTGGC GTAATGATGA GTTCATTGGT
TCACAGGATA TCGTATTTGA ATCGACAACA GAAAATACAG GTGATAAATC AGGTGGGTTA
ATGCCCTGTT TTAACCAGGT ACTCCTTGAA CGAATTAGCC TTAATAGCAG TGCATTTCCC
GAGTTAGCCC AGCAGCAAAA CAATAAATGC ATCAATTTAC TGAAAGCTGT ACCTGATGCC
ACAATTAACT TTGATTTTGC AGCGATGCGC CTGAACATCA CTATTCCTCA GATAGCGTTG
TTGAGTAGCG CTCACGGTTA CATTCCGCCT GAAGAGTGGG ATGAAGGTAT TCCTGCTTTA
CTCCTGAATT ATAATTTCAC CGGTAACAGA GGTAATGGTA ACGATAGCTA TTTTTTTAGT
GAGCTCAGCG GGATTAATAT TGGCCCGTGG CGTTTACGCA ACAATGGTTC CTGGAACTAT
TTTCGCGGAA ATGGATATCA TTCAGAACAG TGGAATAATA TTGGCACCTG GGTACAGCGC
GCCATTATTC CGCTGAAAAG TGAACTGGTA ATGGGAGACG GCAATACAGG AAGTGATATT
TTCGATGGTG TTGGATTTCG TGGTATACGG CTTTACTCTT CCGATAATAT GTATCCTGAT
AGCCAGCAAG GGTTTGCCCC AACAGTACGT GGGATTGCCC GTACGGCGGC CCAGCTAACG
ATTCGGCAAA ATGGTTTTAT TATCTATCAA AGCTATGTTT CCCCCGGCGC TTTTGAAATT
ACAGATTTGC ACCCGACATC TTCAAATGGC GATCTGGACG TCACCATCGA CGAGCGCGAT
GGTAATCAGC AGAATTACAC AATTCCGTAT TCAACAGTGC CAATTTTACA ACGCGAAGGG
CGTTTCAAAT TTGACCTGAC GGCGGGCGAT TTTCGTAGCG GTAATAGTCA GCAATCATCG
CCTTTCTTTT TTCAGGGTAC GGCACTCGGC GGTTTACCAC AGGAATTTAC TGCCTACGGC
GGGACGCAAT TATCTGCCAA TTACACCGCC TTTTTATTAG GGCTGGGGCG CAACCTCGGG
AACTGGGGCA CAGTGTCGCT GGATGTGACC CATGCGCGCA GTCAGTTAGC CGACGACAGT
CGTCATGAGG GGGATTCCAT TCGCTTCCTC TATGCGAAAT CGATGAACAC CTTCGGCACC
AATTTTCAGT TAATGGGTTA CCGCTATTCG ACACAAGGTT TTTATACCCT TGATGATGTT
GCGTATCGTC GAATGGAGGG GTACGAATAT GATTACGATT ACGACGGTGA GCATCGCGAT
GAACCGATAA TCGTGAATTA CCACAATTTA CGCTTTAGCC GTAAAGACCG TTTGCAGTTA
AATATTTCAC AATCACTTAA TGACTTTGGC TCGCTTTATA TCTCTGGTAC CCATCAAAAA
TACTGGAATA CTTCGGATTC AGATACCTGG TATCAGGTGG GGTATACCAG CAGCTGGGTT
GGCATCAGTT ATTCACTCTC ATTTTCGTGG AATGAATCTG TAGGGATCCC CGATAACGAA
CGTATTGTCG GACTTAATGT TTCAGTGCCT TTCAATGTTC TGACCAAACG TCGCTACACC
CGGGAAAATG CGCTCGACCG CGCTTATGCC TCCTTTAACG CCAACCGTAA CAGCAACGGG
CAAAATAGCT GGCTGGCAGG TGTAGGTGGG ACCTTACTGG AAGGCCACAA CCTGAGTTAT
CACGTAAGCC AGGGTGATAC CTCGAATAAT GGGTATACGG GCAGCGCCAC GGCAAACTTG
CAGGCCGCTT ACGGTACGCT GGGGGTCGGG TATAACTACG ACCGCGATCA ACATGACGTT
AACTGGCAGC TGTCTGGCGG TGTGGTCGGG CATGAAAATG GCATAACGCT GAGCCAGCCT
TTAGGGGATA CCAATGTTTT GATTAAAGCG CCTGGCGCAG GCGGTGTACG CATTGAAAAT
CAAACTGGCA TTTTAACCGA CTGGCGCGGC TATGCGGTGA TGCCGTATGC CACGGTTTAT
CGGTATAACC GTATCGCGCT TGATACCAAT ACGATGGGGA ATTCCATCGA TGTTGAAAAA
AATATTAGCA GCGTTGTGCC GACGCAAGGC GCGTTGGTTC GTGCCAATTT TGATACCCGC
ATAGGCGTGC GGGCGCTCAT TACCGTTACC CAGGGCAGAA AACCGGTGCC GTTTGGATCA
CTGGTACGGG AAAACAGTAC CGGAATAACC AGTATGGTGG GTGATGACGG GCAAGTTTAT
TTAAGTGGTG CGCCATTGTC TGGTGAATTA CTGGTTCAGT GGGGAGACGG CGCGAACTCA
CGCTGCATTG CGCACTATGT ATTGCCGAAG CAAAGCTTAC AGCAAGCCGT CACAGTTATT
TCGGCAGTTT GCACACATCC TGGCTCATAA
|
|---|
| Protein sequence | MKIPTTTDIP QRYTWCLAGI CYSSLAILPS FLSYAESYFN PAFLLENGTS VADLSRFERG
NHQPAGVYRV DLWRNDEFIG SQDIVFESTT ENTGDKSGGL MPCFNQVLLE RISLNSSAFP
ELAQQQNNKC INLLKAVPDA TINFDFAAMR LNITIPQIAL LSSAHGYIPP EEWDEGIPAL
LLNYNFTGNR GNGNDSYFFS ELSGINIGPW RLRNNGSWNY FRGNGYHSEQ WNNIGTWVQR
AIIPLKSELV MGDGNTGSDI FDGVGFRGIR LYSSDNMYPD SQQGFAPTVR GIARTAAQLT
IRQNGFIIYQ SYVSPGAFEI TDLHPTSSNG DLDVTIDERD GNQQNYTIPY STVPILQREG
RFKFDLTAGD FRSGNSQQSS PFFFQGTALG GLPQEFTAYG GTQLSANYTA FLLGLGRNLG
NWGTVSLDVT HARSQLADDS RHEGDSIRFL YAKSMNTFGT NFQLMGYRYS TQGFYTLDDV
AYRRMEGYEY DYDYDGEHRD EPIIVNYHNL RFSRKDRLQL NISQSLNDFG SLYISGTHQK
YWNTSDSDTW YQVGYTSSWV GISYSLSFSW NESVGIPDNE RIVGLNVSVP FNVLTKRRYT
RENALDRAYA SFNANRNSNG QNSWLAGVGG TLLEGHNLSY HVSQGDTSNN GYTGSATANL
QAAYGTLGVG YNYDRDQHDV NWQLSGGVVG HENGITLSQP LGDTNVLIKA PGAGGVRIEN
QTGILTDWRG YAVMPYATVY RYNRIALDTN TMGNSIDVEK NISSVVPTQG ALVRANFDTR
IGVRALITVT QGRKPVPFGS LVRENSTGIT SMVGDDGQVY LSGAPLSGEL LVQWGDGANS
RCIAHYVLPK QSLQQAVTVI SAVCTHPGS
|
|---|
| |