| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0229 |
|---|
| Symbol | clpV |
|---|
| ID | 5592204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 246871 |
|---|
| End bp | 249642 |
|---|
| Gene Length | 2772 bp |
|---|
| Protein Length | 923 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640919416 |
|---|
| Product | type VI secretion ATPase |
|---|
| Protein accession | YP_001457003 |
|---|
| Protein GI | 157159685 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 66 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAGA TTGATCTTCC CACGCTGGTA AAACGGCTTA ACCTGTTCTC CCGCCAGGCG
CTGGAGATGG CCGCCTCTGA ATGTATGAGC CAGCAGGCAG CGGAAATTAC CGTCAGCCAT
GTGCTTATTC AGATGCTCGC CATGCCACGC AGTGACCTGC GGGTTATTAC CCGCCAGGGC
GATATTGGCA TGGAAGAGTT GCGCCAGGCG CTGACGGTGG AGAACTACAC AACTGCCCGT
TCTGCGGACA GCTACCCGGC ATTTTCCCCG ATGCTGGTTG AGTGGCTGAA AGAGGGCTGG
CTGCTGGCGT CGGCTGAGAT GCAGCACAGC GAATTGCGTG GCGGCGTGTT GCTGCTGGCC
CTGCTGCATT CGCCGCTGCG TTATATACCG CCTGCTGCCG CCCGGCTGTT GACCGGCATT
AACCGTGACC GTCTGCAACA GGACTTTGTG CAATGGACAC AGGAGTCGGC GGAATCAGTC
GTGCCGGATG CAGACGGTAA AGGCGCAGGC ACACTGACGG ACGCTGCTGA CACCCTGCTT
GCCCGCTACG CCAAAAACAT GACCGCAGAC GCCCGTAACG GCAGGCTTGA CCCGGTACTG
TGCCGCGACC ACGAAATCGA CCTGATGATC GACATTCTCT GCCGCCGCCG CAAGAACAAC
CCGGTGGTGG TGGGCGAAGC AGGCGTGGGT AAAAGCGCCT TAATCGAAGG GCTGGCGCTG
CGCATCGTGG CAGGCCATGT GCCGGACAAG CTGAAAAACA CCGATATCAT GACCCTTGAC
TTGGGCGCAT TGCAGGCCGG AGCGTCGGTG AAGGGTGAAT TCGAAAAACG TTTCAAAGGG
CTGATGGCGG AGGTCATTTC CTCCCCGGTG CCGGTCATTC TGTTTATCGA CGAAGCACAT
ACCCTGATTG GCGCGGGCAA CCAGCAGGGC GGGCTGGATA TCTCCAACCT GCTCAAACCG
GCGCTGGCGC GCGGCGAGCT GAAAACCATC GCCGCCACCA CCTGGAGCGA GTACAAAAAA
TACTTCGAAA AAGATGCCGC CCTGTCGCGC CGCTTCCAGT TGGTGAAGGT CAGCGAACCC
AACGCTGCCG AAGCCACCAT TATTCTGCGC GGTCTGTCGG CGGTCTATGA ACAGTCTCAC
GGCGTGCTGA TTGATGATGA CGCCTTGCAG GCCGCTGCGA CATTAAGCGA GCGTTATCTC
TCCGGGCGTC AGTTACCGGA CAAAGCGATT GATGTGCTGG ATACCGCCTG CGCCCGTGTG
GCCATCAACC TGTCGTCGCC GCCGAAGCAA ATCTCGGCGC TGACCACTCT GAGCCACCAG
CAGGAGGCGG AAATTCGCCA GCTTGAGCGC GAGCTTCGCA TCGGACTGCG TACCGACACA
TCACGGATGA CCGAGGTGCT GGTGCAGTAT GATGAAACGC TGACGGCGCT GGATGAACTG
GAAGCGGCCT GGCACCAGCA GCAGACGCTG GTCCGGGAGA TTATTGCGCT GCGCCAGCAG
TTACTGGGCG TGGCAGAGGA CGATGCGGCG CCGTTGCCGG ACGCAGATAC CGTGGAGGAT
ACGCAGCCAG AGTCAGAGTC AGAGTCAGAG CAGGATAATA CCGGTGCCGA ACCGGCTGAT
GAAGCTGGCA GCGAACAGCC GAAAGAGACC GCTGAAACAG TTTCCCCGGT ACAACGTCTG
GCACATCTCA CTGCCGAACT GGACGCCCTG CATAACGACC GGTTGCTGGT TTCCCCGCAC
GTCGATAAAA AACAGATTGC GGCGGTGATT GCCGAATGGA CCGGCGTGCC GCTTAACCGC
CTGTCGCAGA ATGAAATGTC GGTCATCACC GACCTGCCAA AATGGCTCGG CGACACCATC
AAAGGCCAGG ACCTGGCGAT TGCCAGCCTG CACAAACACC TGCTGACCGC ACGCGCCGAC
CTGCGCCGTC CGGGACGCCC GCTGGGCGCG TTCCTGCTGG CTGGCCCCAG CGGCGTGGGT
AAAACTGAAA CCGTCCTGCA ACTGGCAGAG CTGCTCTACG GCGGTCGCCA GTACCTGACC
ACCATCAATA TGTCCGAGTT CCAGGAGAAA CATACCGTCT CGCGACTGAT TGGTTCGCCT
CCGGGCTACG TTGGCTACGG TGAAGGCGGC GTACTGACCG AAGCGATTCG CCAGAAACCC
TACTCGGTAG TACTGCTCGA TGAAGTGGAA AAAGCGCACC CGGATGTGCT CAACCTGTTC
TACCAGGCGT TCGATAAGGG CGAAATGGCA GACGGTGAAG GCCGCCTGAT TGACTGCAAA
AATATCGTCT TCTTCCTGAC GTCCAACCTC GGCTACCAGG TAATAGTCGA GCATGCCGAT
GACCCGGAAA CCATGCAGGA AGTACTGTAT CCGGTGCTGG CCGACTTCTT CAAACCTGCC
CTGCTGGCGC GTATGGAAGT GGTGCCGTAC CTGCCGCTGT CGAAAGAGAC GCTCGCCACC
ATCATTGCCG GGAAACTGGC CCGCCTGGAT AACGTGCTGC GCAGCCGCTT TGGCGCGGAG
GTGATTATAG AACCGGAAGT GACGGACGAA ATCATGAGCC GCGTCACCCG CGCGGAAAAC
GGCGCGAGGA TGCTGGAATC GGTCATCGAC GGCAATATGC TGCCGCCGCT CTCCCTGCTG
CTGTTGCAGA AAATGGCGGC GAATACGGCG GTTGCCCGGA TTCGGTTGTC GGCAGTGGAC
GGCGCATTTA CGGCAGACGT GGAAGATGCT CAGAACGACG AGTCCGTCAC AAAGGATGAA
ACGGTTTTAT GA
|
|---|
| Protein sequence | MIQIDLPTLV KRLNLFSRQA LEMAASECMS QQAAEITVSH VLIQMLAMPR SDLRVITRQG
DIGMEELRQA LTVENYTTAR SADSYPAFSP MLVEWLKEGW LLASAEMQHS ELRGGVLLLA
LLHSPLRYIP PAAARLLTGI NRDRLQQDFV QWTQESAESV VPDADGKGAG TLTDAADTLL
ARYAKNMTAD ARNGRLDPVL CRDHEIDLMI DILCRRRKNN PVVVGEAGVG KSALIEGLAL
RIVAGHVPDK LKNTDIMTLD LGALQAGASV KGEFEKRFKG LMAEVISSPV PVILFIDEAH
TLIGAGNQQG GLDISNLLKP ALARGELKTI AATTWSEYKK YFEKDAALSR RFQLVKVSEP
NAAEATIILR GLSAVYEQSH GVLIDDDALQ AAATLSERYL SGRQLPDKAI DVLDTACARV
AINLSSPPKQ ISALTTLSHQ QEAEIRQLER ELRIGLRTDT SRMTEVLVQY DETLTALDEL
EAAWHQQQTL VREIIALRQQ LLGVAEDDAA PLPDADTVED TQPESESESE QDNTGAEPAD
EAGSEQPKET AETVSPVQRL AHLTAELDAL HNDRLLVSPH VDKKQIAAVI AEWTGVPLNR
LSQNEMSVIT DLPKWLGDTI KGQDLAIASL HKHLLTARAD LRRPGRPLGA FLLAGPSGVG
KTETVLQLAE LLYGGRQYLT TINMSEFQEK HTVSRLIGSP PGYVGYGEGG VLTEAIRQKP
YSVVLLDEVE KAHPDVLNLF YQAFDKGEMA DGEGRLIDCK NIVFFLTSNL GYQVIVEHAD
DPETMQEVLY PVLADFFKPA LLARMEVVPY LPLSKETLAT IIAGKLARLD NVLRSRFGAE
VIIEPEVTDE IMSRVTRAEN GARMLESVID GNMLPPLSLL LLQKMAANTA VARIRLSAVD
GAFTADVEDA QNDESVTKDE TVL
|
|---|
| |