| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0226 |
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| Symbol | |
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| ID | 5591432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 241171 |
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| End bp | 244695 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640919413 |
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| Product | hypothetical protein |
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| Protein accession | YP_001457000 |
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| Protein GI | 157159682 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTCAGAT TACCAACACC CCGACTACTC AGCGGACTCA AATCAGCCCT GCGACCGGCG
ATGCCCCGGT TTAAAGTCTC TGCTTTCTGG CTGCTGATAC TGGCGTGGAT TTTTCTGCTG
GTGTGGATCT GGTGGAAAGG CCCGACGTGG ACGCTGTATG AAGAACAGTG GCTCAAACCA
CTGGCGAACC GCTGGCTGGC AACGGCGGCG TGGGGGATTA TTGCCCTGAT GTGGCTTACC
GTCCGGGTGA TGAAGCGCCT GCAACAGCTT GAAAAAATGC AAAAGCAACA GCGCGAGGAA
GCCGTTGATC CGCTCAGCGT GGAACTGAAC GCCCAGCAGC GTTATCTTGA CCGCTGGCTG
CTGCGCCTGC AACGCCATCT CGACAACCGC CGTTTCCTGT GGCAGTTGCC GTGGTATATG
GTCATCGGCC CGGCGGGCAG TGGCAAAACG ACACTGCTGC GCGAGGGGTT TCCGTCCGAC
ATTATTTATG CCCCGGAGGG CGCACGCGGC GCAGAACAAC GCCTGTACCT CACGCCCCAT
GTCGGTAAAC AGGCGGTGAT CTTTGATATC GACGGCACAC TCTGCGCTCC CGCTGATGCG
GATATCCTGC ATCGCCGTCT GTGGGAACAT GCCCTCGGCT GGCTGAAAGA AAAGCGCGCG
CGCCAGCCGC TGAATGGGAT TATTCTGACA CTCGATTTAC CCGATCTGCT TACCGCAGAC
AAACGCCGCC GCGAGCATCT GTTACAGGCG CTGCGCAGCC GCTTGCAGGA TATACGCCAG
CATCTTCACT GCCAGTTACC GGTTTACGTG GTACTTACCC GGCTTGATTT ATTGCAGGGT
TTTGCCGCCC TGTTTCAGTC CCTGAACAGA CAGGATCGCG ATGCGATTCT GGGCGTCACG
TTCACCCGCC GTGCCCATGA AAATGATGAC TGGCGAACAG AGTTGAATGC TTTCTGGCAG
ACATGGGTGG ATCGAATGAA TCTGGCGTTG CCGGATCTGA TGGTCGCTCA GACTCACACC
CGCGCGTCTT TATTCAGTTT TTCCCGCCAG ATGCAGGGAA GCCGTGAACC GCTGGTGTCA
CTGCTTGAGG GTCTGCTTGA TGGCGAAAAT ATGAACGTGA TGCTGCGTGG TGTCTATCTC
ACCTCTTCGC TTCAGCGTGG ACAGATGGAT GATATATTCA CCCAGTCTGC CGCCCGCCAG
TACCGGCTGG GCAATAACCC ACTGGCGTCC TGGCCCCTGG TGGACACCGC GCCTTATTTC
ACCCGCAGCC TGTTCCCGCA GGCATTACTC GCAGAGCCTA ATCTGGCAAC AGAGAGCCGC
GCCTGGCTGA TACGTTCCCG TCGCCGCCTG ACGGTTTTCT CTGCCACAGG CGGCGTGGCA
GCACTGCTGC TCATCACCGG CTGGCATCAC TATTACAACG GTAACTATCA GTCTGGCATC
ACCGTGCTTA AGCAGGCCAA AGCCTTTATG GACGTGCCGC CTCCGCAGGG GGAAGATGAC
TTTGGCAACC TGCAACTGCC GCTCCTGAAC CCGGTACGCG ATGCCACACT GGCCTATGGC
GACTGGGGCG ACCGCAGCCG TCTGGCCGAT ATGGGACTGT ACCAGGGACG ACGTATCGGG
CCTTATGTGG AACAGACCTA TCTGCAACTG CTGGAGCAAC GTTACCTGCC CTCGCTGTTT
AACGGGCTGG TCAAAGCGCT GAACGCCGCG CCGCCGGAGA GTGAAGAAAA ACTCGCGGTG
CTGCGCGTGA TGCGAATGCT GGAGGACAAA AGCGGACGTA ACAATCAGGT GGTGAAGCAG
TATATGGCAA AACGCTGGAG CGAAAAGTTC CACGGTCAGC GCGATATCCA GGCACAACTG
ATGTCCCATC TTGACTACGC GCTGGCTCAT ACTGACTGGC ACGCAGAGCG TCAGGCGGGC
GACGGTGACG CCATCAGCCG CTGGACGCCA TATGACAAGC CCGTGGTATC AGCACAGAAA
GAACTGAGCA AACTGCCTGT CTACCAGCGG GTTTACCAGA GCCTGAAAAC GCGGGCGCTG
GGCGTTCTTC CTGCCGACCT CAATCTGCGT GACCAGGTAG GGCCAACCTT TGACCAGGTG
TTTACATCTG CCGATGACAA CAAACTGGTT GTTCCACAGT TTCTTACCCG TTACGGCCTG
CAAAGCTATT TTGTAAAACA GCGCGATGAA CTGGTTGAAC TGACGGCGAT GGATTCCTGG
GTACTTAACC TTACCCGCAG CGTGAAATAC AGTGACGCCG ACCGCGCGGA AATCCAGCGC
CAGTTGACCG AGCAGTATAT CAGCGACTAC ACCGCCACCT GGCGGGCCGG GATGGACAAT
CTGAATATCC GCAATTTTGA GTCCATCGGA CAACTGACCG GGGCGCTGGA GCAGGTTATC
AGCGGCGACC AGCCTTTGCA GCGGGCGCTG ACCGTGCTGC GTGACAACAC ACAGCCAGGC
GTCTTTTCTG AAAAACTCTC TGCCAAAGAA CGGGAGGAAG CCCTGGCAGA GCCGGATTAC
CAGTTACTCA CCCGCCTCGG GCATGAATTC GCCCCGGAAA ACAGTACCCT GGCAGTACAG
AAAGACAAAG AAAGCACGAT GCAGGCCGTG TATCAGCAAC TCACCGAGTT GCACCGCTAC
CTGCTGGCAA TCCAGAACGC GCCTGTACCA GGGAAATCGG CGCTGAAAGC CGTGCAGTTA
CGGCTTGATC AGAACAGCAG CGATCCGATA TTCGCCACCC GCCAGATGGC AAAAACGCTG
CCTGCTCCGC TCAACCGCTG GGTTGGCAGA CTGACTGACC AGGCCTGGCA TGTGGTGATG
GTGGAGGCTG TTCATTATAT GGAAGTGGAC TGGCGCGACA GCGTGGTGAA ACCGTTTAAC
GAGCAACTGG CAAATAACTA TCCGTTTAAT CCGCGTTCTG CACAGGATGC CTCACTGGAT
GCCTTCGAAC GCTTCTTTAA ACCGGATGGC ATACTGGATA CCTTCTACCA GCAGAACCTG
AAGCTGTTTA TCGATAATGA CCTGAGTCTG GAGGATGGCG ATAACAACGT CATTATTCGC
GAAGATATTA TTGCGCAACT GGAAACTGCG CAGAAAATCC GTGACATCTT CTTCAGCAAA
CAGAACGGTC TGGGAACATC CTTTGCCGTG GAAACGGTAT CGCTTTCAGG CAATAAACGC
CGCAGTGTAC TGAACCTTGA CGGTCAGTTA GTCGATTACA GCCAGGGCCG TAACTATACC
GCCCATCTGG TCTGGCCTAA CAACATGCGC GAAGGCAACG AAAGTAAGCT GACGCTCATC
GGCACCAGCG GCAACGCGCC GCGCAGTATC AGCTTCAGCG GGCCGTGGGC GCAGTTCCGC
CTGTTCGGGG CCGGACAACT GACCGGAGTA CAGGATGGCA ACTTTACCGT GCGCTTTAGC
GTGGACGGTG GCGCGATGAC CTACCGTGTG CATACCGACA CGGAAGATAA CCCGTTCAGC
GGTGGGTTGT TCAGCCAGTT TGGTCTGTCA GACACACTGT ACTGA
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| Protein sequence | MFRLPTPRLL SGLKSALRPA MPRFKVSAFW LLILAWIFLL VWIWWKGPTW TLYEEQWLKP
LANRWLATAA WGIIALMWLT VRVMKRLQQL EKMQKQQREE AVDPLSVELN AQQRYLDRWL
LRLQRHLDNR RFLWQLPWYM VIGPAGSGKT TLLREGFPSD IIYAPEGARG AEQRLYLTPH
VGKQAVIFDI DGTLCAPADA DILHRRLWEH ALGWLKEKRA RQPLNGIILT LDLPDLLTAD
KRRREHLLQA LRSRLQDIRQ HLHCQLPVYV VLTRLDLLQG FAALFQSLNR QDRDAILGVT
FTRRAHENDD WRTELNAFWQ TWVDRMNLAL PDLMVAQTHT RASLFSFSRQ MQGSREPLVS
LLEGLLDGEN MNVMLRGVYL TSSLQRGQMD DIFTQSAARQ YRLGNNPLAS WPLVDTAPYF
TRSLFPQALL AEPNLATESR AWLIRSRRRL TVFSATGGVA ALLLITGWHH YYNGNYQSGI
TVLKQAKAFM DVPPPQGEDD FGNLQLPLLN PVRDATLAYG DWGDRSRLAD MGLYQGRRIG
PYVEQTYLQL LEQRYLPSLF NGLVKALNAA PPESEEKLAV LRVMRMLEDK SGRNNQVVKQ
YMAKRWSEKF HGQRDIQAQL MSHLDYALAH TDWHAERQAG DGDAISRWTP YDKPVVSAQK
ELSKLPVYQR VYQSLKTRAL GVLPADLNLR DQVGPTFDQV FTSADDNKLV VPQFLTRYGL
QSYFVKQRDE LVELTAMDSW VLNLTRSVKY SDADRAEIQR QLTEQYISDY TATWRAGMDN
LNIRNFESIG QLTGALEQVI SGDQPLQRAL TVLRDNTQPG VFSEKLSAKE REEALAEPDY
QLLTRLGHEF APENSTLAVQ KDKESTMQAV YQQLTELHRY LLAIQNAPVP GKSALKAVQL
RLDQNSSDPI FATRQMAKTL PAPLNRWVGR LTDQAWHVVM VEAVHYMEVD WRDSVVKPFN
EQLANNYPFN PRSAQDASLD AFERFFKPDG ILDTFYQQNL KLFIDNDLSL EDGDNNVIIR
EDIIAQLETA QKIRDIFFSK QNGLGTSFAV ETVSLSGNKR RSVLNLDGQL VDYSQGRNYT
AHLVWPNNMR EGNESKLTLI GTSGNAPRSI SFSGPWAQFR LFGAGQLTGV QDGNFTVRFS
VDGGAMTYRV HTDTEDNPFS GGLFSQFGLS DTLY
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