Gene EcHS_A0125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A0125 
SymbolspeE 
ID5593793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp137237 
End bp138103 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content51% 
IMG OID640919312 
Productspermidine synthase 
Protein accessionYP_001456907 
Protein GI157159589 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID[TIGR00417] spermidine synthase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0000000567912 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGAAA AAAAACAGTG GCATGAAACG CTACACGACC AGTTTGGGCA GTACTTTGCG 
GTAGATAACG TTCTGTATCA TGAAAAGACC GATCACCAGG ATCTGATCAT TTTTGAGAAC
GCTGCATTTG GTCGCGTAAT GGCGCTGGAT GGCGTAGTAC AAACCACCGA GCGCGACGAG
TTTATCTATC ATGAGATGAT GACCCATGTT CCGCTACTGG CCCACGGTCA CGCGAAACAT
GTGCTGATTA TCGGCGGCGG CGACGGTGCC ATGCTGCGTG AAGTAACCCG ACATAAAAAC
GTTGAGTCAA TCACGATGGT GGAAATCGAT GCGGGTGTCG TATCGTTCTG CCGTCAGTAT
CTACCCAACC ATAACGCCGG TAGCTACGAC GATCCGCGCT TTAAGCTGGT GATCGACGAT
GGCGTCAATT TCGTTAATCA AACCAGCCAG ACCTTTGATG TCATTATCTC CGACTGCACC
GATCCTATCG GTCCCGGCGA AAGCCTTTTC ACTTCGGCAT TTTATGAAGG CTGCAAACGT
TGCCTGAATC CTGGCGGTAT CTTCGTCGCA CAAAACGGCG TCTGCTTTTT ACAGCAGGAA
GAAGCCATCG ACAGCCATCG CAAACTCAGC CATTACTTCA GCGACGTTGG CTTTTATCAG
GCGGCGATTC CGACCTATTA CGGCGGTATC ATGACTTTTG CATGGGCGAC AGATAACGAC
GCCTTACGCC ATCTCTCAAC CGAAATTATT CAGGCGCGTT TTCTCGCTTC TGGCCTGAAA
TGCCGTTATT ACAATCCGGC AATCCATACG GCAGCTTTTG CCTTACCTCA GTATCTGCAA
GACGCACTGG CTTCACAGCC GTCCTAA
 
Protein sequence
MAEKKQWHET LHDQFGQYFA VDNVLYHEKT DHQDLIIFEN AAFGRVMALD GVVQTTERDE 
FIYHEMMTHV PLLAHGHAKH VLIIGGGDGA MLREVTRHKN VESITMVEID AGVVSFCRQY
LPNHNAGSYD DPRFKLVIDD GVNFVNQTSQ TFDVIISDCT DPIGPGESLF TSAFYEGCKR
CLNPGGIFVA QNGVCFLQQE EAIDSHRKLS HYFSDVGFYQ AAIPTYYGGI MTFAWATDND
ALRHLSTEII QARFLASGLK CRYYNPAIHT AAFALPQYLQ DALASQPS