| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0031 |
|---|
| Symbol | ispH |
|---|
| ID | 5593742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 29536 |
|---|
| End bp | 30486 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640919219 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001456814 |
|---|
| Protein GI | 157159496 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 0.423956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCC TGTTGGCCAA CCCGCGTGGT TTTTGTGCCG GGGTAGACCG CGCTATCAGC
ATTGTTGAAA ACGCGCTGGC CATTTACGGC GCACCGATAT ATGTCCGTCA CGAAGTGGTA
CATAACCGCT ATGTGGTCGA TAGCTTGCGT GAGCGTGGGG CTATCTTTAT TGAGCAGATT
AGCGAAGTAC CGGACGGCGC GATCCTGATT TTCTCCGCAC ACGGTGTTTC TCAGGCGGTA
CGTAACGAAG CAAAAAGTCG CGATTTGACG GTATTTGACG CGACCTGTCC GCTGGTGACC
AAAGTGCATA TGGAAGTCGC CCGCGCTAGT CGCCGTGGCG AAGAATCTAT TCTCATCGGT
CACGCCGGGC ACCCGGAAGT GGAAGGCACG ATGGGTCAGT ACAGCAACCC GGAAGGGGGA
ATGTATCTGG TTGAATCACC AGACGATGTG TGGAAACTGA CGGTCAAAAA CGAAGAGAAA
CTCTCCTTTA TGACCCAGAC CACGCTGTCG GTGGATGACA CGTCTGATGT GATCGACGCG
CTGCGTAAAC GCTTCCCGAA AATTGTCGGT CCGCGCAAAG ATGACATCTG CTACGCCACG
ACTAACCGAC AGGAAGCGGT ACGTGCCCTG GCCGAACAGG CGGAAGTTGT GCTGGTGGTC
GGTTCGAAAA ACTCCTCTAA CTCCAACCGT CTGGCGGAGC TGGCCCAGCG TATGGGCAAA
AGCGCGTTTT TGATTGATGA TGCGAAAGAT ATCCAGGAAG AGTGGGTGAA AGAGGTTAAA
TGCGTCGGCG TGACTGCGGG CGCATCGGCT CCGGATATTC TGGTGCAGAA TGTGGTGGCA
CGTTTGCAAC AGCTGGGCGG TGGTGAAGCC ATTCCGCTGG AAGGACGTGA AGAAAACATT
GTTTTCGAAG TGCCGAAAGA GCTGCGTGTC GATATTCGTG AAGTCGATTA A
|
|---|
| Protein sequence | MQILLANPRG FCAGVDRAIS IVENALAIYG APIYVRHEVV HNRYVVDSLR ERGAIFIEQI
SEVPDGAILI FSAHGVSQAV RNEAKSRDLT VFDATCPLVT KVHMEVARAS RRGEESILIG
HAGHPEVEGT MGQYSNPEGG MYLVESPDDV WKLTVKNEEK LSFMTQTTLS VDDTSDVIDA
LRKRFPKIVG PRKDDICYAT TNRQEAVRAL AEQAEVVLVV GSKNSSNSNR LAELAQRMGK
SAFLIDDAKD IQEEWVKEVK CVGVTAGASA PDILVQNVVA RLQQLGGGEA IPLEGREENI
VFEVPKELRV DIREVD
|
|---|
| |