Gene EcE24377A_F0040 details

Gene Information

• Locus tag: EcE24377A_F0040
• Symbol: def
• ID: 5585676
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli E24377A
• Kingdom: Bacteria
• Replicon accession: NC_009786
• Strand: +
• Start bp: 33671
• End bp: 34180
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640913759
• Product: peptide deformylase
• Protein accession: YP_001451409
• Protein GI: 157149370
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.285636
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGTTT TGCAAGTGTT ACATATTCCG GACGAGCGGC TTCGCAAAGT TGCTAAACCG 
GTAGAAGAAG TGAATGCAGA AATTCGGCGT ATCGTCGATG ATATGTTCGA GACGATGTAC 
GCAGAAAAAG GTATTGGCCT GGCGGCAACC CAGGTTGATA TCCATCAACG TATCATTGTT 
ATTGATGTTT CAGAAAACCG TGACGAACGG CTGGTGTTAA TCAATCCGGA GCTTTTAGAA 
AAAAGCGGCG AAACAGGCAT TGAAGAAGGT TGCCTGTCGA TCCCTGAACA ACGTGCTTTA 
GTGCCACGCG CAGAGAAAGT TAAAATTCGC GCCCTGGACC GCGACGGTAA ACCATTTGAA 
CTGGAAGCAG ACGGTCTGTT AGCCATCTGT ATTCAGCATG AGATGGATCA CCTGGTCGGC 
AAACTGTTTA TGGATTATCT GTCACCGTTG AAACAACAAC GTATTCGTCA GAAAGTTGAA 
AAACTGGATC GTCTGAAAGC CCGGGCTTAA 

 

Protein sequence

MSVLQVLHIP DERLRKVAKP VEEVNAEIRR IVDDMFETMY AEKGIGLAAT QVDIHQRIIV 
IDVSENRDER LVLINPELLE KSGETGIEEG CLSIPEQRAL VPRAEKVKIR ALDRDGKPFE 
LEADGLLAIC IQHEMDHLVG KLFMDYLSPL KQQRIRQKVE KLDRLKARA