Gene VIBHAR_06144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06144 
SymbolrbsC 
ID5556701 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand- 
Start bp1322328 
End bp1323311 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content48% 
IMG OID640910618 
Productribose ABC transporter permease protein 
Protein accessionYP_001448264 
Protein GI156977358 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACTA ATACCATGAG CAAACCAAAC GAAACGGGCA GCAAGAAGCT GTTCACCAAA 
GAATGGCTGA TTGAGCAAAA GTCACTGATC GCATTGATTT TCTTGATTGT TGTTGTGTCA 
TTTTTGAACC CAAACTTTTT TACGGTAGAC AACATTCTTA ACATCCTTCG TCAAACCTCA 
GTCAACGCGA TCATTGCAGT TGGTATGACG CTGGTTATTT TGACTGCTGG CATTGACCTA 
AGCGTAGGAT CTGTACTTGC ACTATGTGGT GCCTTCGCGG CGAGCATGAT TGCACTAGAA 
GTGCCAGTGC TTATCGCGGT TCCAACAGCA TTGTTCGCTG GTGCAGCTCT AGGAGCGATC 
AGCGGTATCA TTATTGCCAA AGGTAAGGTT CAAGCCTTTA TCGCAACGCT GGTTACCATG 
ACGTTACTAC GCGGCGTAAC AATGGTTTAC ACAGACGGTC GTCCTATCTC TACGGGCTTT 
ACTGACACAG CAGACGCATT TGCATGGTTC GGTACAGGTT ACGCTCTTGG TATCCCAGTT 
CCAGTTTGGT TGATGGTGAT TGTCTTTGCG GCAGCTTGGT ACCTACTGAA CCACACTCGC 
TTTGGTCGCT ACGTTTACGC ACTTGGTGGC AACGAATCAG CAACGCGACT TTCTGGTATC 
AATGTTGACC GTGTGAAAAT TGGTGTATAC GCCATTTGCG GTATGTTGGC AGCGCTTGCA 
GGCATTATCG TGACGTCTCG TCTGTCTTCA GCACAGCCAA CTGCGGGTAT GGGCTACGAG 
CTAGACGCTA TCGCAGCGGT TGTTCTTGGC GGTACTAGCT TGATGGGCGG TAAAGGTCGC 
ATCATGGGTA CCTTGATTGG TGCTCTAATC ATCGGCTTCT TGAACAACGC GCTGAACCTA 
CTCGATGTTT CTTCTTACTA CCAAATGATT GCGAAAGCAG TGGTTATCTT GCTAGCGGTA 
CTGGTAGACA ACAAAAACAA GTAA
 
Protein sequence
MSTNTMSKPN ETGSKKLFTK EWLIEQKSLI ALIFLIVVVS FLNPNFFTVD NILNILRQTS 
VNAIIAVGMT LVILTAGIDL SVGSVLALCG AFAASMIALE VPVLIAVPTA LFAGAALGAI 
SGIIIAKGKV QAFIATLVTM TLLRGVTMVY TDGRPISTGF TDTADAFAWF GTGYALGIPV 
PVWLMVIVFA AAWYLLNHTR FGRYVYALGG NESATRLSGI NVDRVKIGVY AICGMLAALA 
GIIVTSRLSS AQPTAGMGYE LDAIAAVVLG GTSLMGGKGR IMGTLIGALI IGFLNNALNL 
LDVSSYYQMI AKAVVILLAV LVDNKNK