Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_06023 |
Symbol | |
ID | 5557649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | + |
Start bp | 1207649 |
End bp | 1209409 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640910497 |
Product | ABC efflux transporter permease/ATP-binding protein |
Protein accession | YP_001448143 |
Protein GI | 156977237 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGAA AAAATAATAA AAACCTCAGC ATTCTTCTAA AACTCAACAC CTTCATTTCG CCTCATAAAT GGCGAGTTGC CGCGGCTTTG GTTGCCCTGT TCGCAACAGC AAGTCTAACG CTATCCGTGG GTTACGGCGT TCGAATGTTG ATAGATCAAG GCTTCGCCCA ACAATCACAA CAAGAACTCA CTAACGCGAT ACAGTTCATC ATCGGCGTGA CACTGTGTAT TGCTGCGGGC ACGTTTTTCC GTTTCTATCT GGTTTCCTCG GTCGGCGAGC GCGTGAGTGC GGATATTCGT CTTGCGGTGT TTAACCATGT AATGACACTG CACCCTAGTT ACTTTGAGAC TAATAGCAGC GGCGATATTA TGTCTCGGCT CACCACAGAC ACGACGCTGT TGCAAAGCAT TATCGGGTCG TCATTTTCGA TGGCCATGCG CAGCGCAATC ATGTGTGTTG GTGCCATCAT CATGCTGTTT GCGACTAACT TTAAGCTCAC TTTGATTGTG CTGGCCTCCG TGCCGTTTGT TTTGGTTCCT ATTTTGGTTT TCGGGAGACG AGTACGCGCC CTATCTCGGA AAAGCCAAGA CACGATGGCA GATGTAGGCA GCTACGCAGG TGAAGCGATT GAGCATATCA AAACCGTGCA GAGCTTTAGC TCAGAGCAAC ATGAGCGCGC GGCATTTGCA GTAGAAGTGG AAAAAGCTTA TGAAGTTGGC AGACAGCGAG TCAAACAACG CGCGATTCTA ATTTCCGGCG TTATCGTGAT CGTATTCAGT GCTATTGCCG GGATGCTTTG GGTCGGCGGC AGTGACGTTA TTCACGGTAA GATGTCGGGC GGCGATCTAG CAGCATTTGT GTTCTATGCC ATTATGGTTG CCTCCTCCAC AGCGACGATT TCAGAAGTCA TGGGCGAGCT GCAAAGGGCT GCAGGTGCGA CAGAGAGGTT GATTGAGATT CTACAAGTGG AAAGTGACAT CACGGCACCA ACTAACCACA TGCCGATCAC CGATACTATG CCTGCGGAAG TAACGTTTGA TTCAGTGAAC TTCAACTACC CTTCCCGCCC AGACCAGCCA GCAGTGAAAG GATTAAACCT AACGGCTGAA CGAGGTAAAG TGTTGGCTCT GGTTGGCCCA TCAGGTGCAG GTAAAACGAC GTTGTTCGAA CTACTGCAGC GCTTTTATGA CCCTCAACAA GGGCGAGTCT TATTCGGTGG TGAAGACATT CGTCAGTTCG ATCCTAACGA TCTTCGTAAT CAAATGGCCT TGGTCCCGCA ACAACCAGCT TTGTTTAGTC ACGATGTTTT CCATAACATC CGCTACGGTA ATCCAGATGC TACTGACGAG CAGGTCATTG AAGCAGCGAA GAAGGCACAT GCTCATGAGT TTATCGAAAA GCTACCGGAT GGTTATCACA GCTTTTTGGG CGAGCGTGGT GTGAGATTGT CTGGCGGACA AAAACAGCGC ATCGCCATTG CTCGTGCCAT TTTGAAAGAC CCTAAAATCC TATTGCTTGA TGAAGCCACC AGCGCACTAG ACAGTGAAAG TGAACATCAT GTTCAGCAGG CACTTGAGGC TCTGATGAAA GACAGAACGA CGCTAATCAT TGCCCACCGA CTGTCGACTA TCCAACATGC GGATAAGATA GCCGTGTTAG ATGGTGGAGA GTTGATTGAT ATCGGTAACC ACCAATCGTT GATGCAAAGC TGTGAGTTGT ACCAGCGTTT AGTTGCGTTA CAGTTTAAGC ACTTAGAGTA A
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Protein sequence | MSRKNNKNLS ILLKLNTFIS PHKWRVAAAL VALFATASLT LSVGYGVRML IDQGFAQQSQ QELTNAIQFI IGVTLCIAAG TFFRFYLVSS VGERVSADIR LAVFNHVMTL HPSYFETNSS GDIMSRLTTD TTLLQSIIGS SFSMAMRSAI MCVGAIIMLF ATNFKLTLIV LASVPFVLVP ILVFGRRVRA LSRKSQDTMA DVGSYAGEAI EHIKTVQSFS SEQHERAAFA VEVEKAYEVG RQRVKQRAIL ISGVIVIVFS AIAGMLWVGG SDVIHGKMSG GDLAAFVFYA IMVASSTATI SEVMGELQRA AGATERLIEI LQVESDITAP TNHMPITDTM PAEVTFDSVN FNYPSRPDQP AVKGLNLTAE RGKVLALVGP SGAGKTTLFE LLQRFYDPQQ GRVLFGGEDI RQFDPNDLRN QMALVPQQPA LFSHDVFHNI RYGNPDATDE QVIEAAKKAH AHEFIEKLPD GYHSFLGERG VRLSGGQKQR IAIARAILKD PKILLLDEAT SALDSESEHH VQQALEALMK DRTTLIIAHR LSTIQHADKI AVLDGGELID IGNHQSLMQS CELYQRLVAL QFKHLE
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