Gene VIBHAR_06023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06023 
Symbol 
ID5557649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand
Start bp1207649 
End bp1209409 
Gene Length1761 bp 
Protein Length586 aa 
Translation table11 
GC content49% 
IMG OID640910497 
ProductABC efflux transporter permease/ATP-binding protein 
Protein accessionYP_001448143 
Protein GI156977237 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02204] ABC transporter, permease/ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAGAA AAAATAATAA AAACCTCAGC ATTCTTCTAA AACTCAACAC CTTCATTTCG 
CCTCATAAAT GGCGAGTTGC CGCGGCTTTG GTTGCCCTGT TCGCAACAGC AAGTCTAACG
CTATCCGTGG GTTACGGCGT TCGAATGTTG ATAGATCAAG GCTTCGCCCA ACAATCACAA
CAAGAACTCA CTAACGCGAT ACAGTTCATC ATCGGCGTGA CACTGTGTAT TGCTGCGGGC
ACGTTTTTCC GTTTCTATCT GGTTTCCTCG GTCGGCGAGC GCGTGAGTGC GGATATTCGT
CTTGCGGTGT TTAACCATGT AATGACACTG CACCCTAGTT ACTTTGAGAC TAATAGCAGC
GGCGATATTA TGTCTCGGCT CACCACAGAC ACGACGCTGT TGCAAAGCAT TATCGGGTCG
TCATTTTCGA TGGCCATGCG CAGCGCAATC ATGTGTGTTG GTGCCATCAT CATGCTGTTT
GCGACTAACT TTAAGCTCAC TTTGATTGTG CTGGCCTCCG TGCCGTTTGT TTTGGTTCCT
ATTTTGGTTT TCGGGAGACG AGTACGCGCC CTATCTCGGA AAAGCCAAGA CACGATGGCA
GATGTAGGCA GCTACGCAGG TGAAGCGATT GAGCATATCA AAACCGTGCA GAGCTTTAGC
TCAGAGCAAC ATGAGCGCGC GGCATTTGCA GTAGAAGTGG AAAAAGCTTA TGAAGTTGGC
AGACAGCGAG TCAAACAACG CGCGATTCTA ATTTCCGGCG TTATCGTGAT CGTATTCAGT
GCTATTGCCG GGATGCTTTG GGTCGGCGGC AGTGACGTTA TTCACGGTAA GATGTCGGGC
GGCGATCTAG CAGCATTTGT GTTCTATGCC ATTATGGTTG CCTCCTCCAC AGCGACGATT
TCAGAAGTCA TGGGCGAGCT GCAAAGGGCT GCAGGTGCGA CAGAGAGGTT GATTGAGATT
CTACAAGTGG AAAGTGACAT CACGGCACCA ACTAACCACA TGCCGATCAC CGATACTATG
CCTGCGGAAG TAACGTTTGA TTCAGTGAAC TTCAACTACC CTTCCCGCCC AGACCAGCCA
GCAGTGAAAG GATTAAACCT AACGGCTGAA CGAGGTAAAG TGTTGGCTCT GGTTGGCCCA
TCAGGTGCAG GTAAAACGAC GTTGTTCGAA CTACTGCAGC GCTTTTATGA CCCTCAACAA
GGGCGAGTCT TATTCGGTGG TGAAGACATT CGTCAGTTCG ATCCTAACGA TCTTCGTAAT
CAAATGGCCT TGGTCCCGCA ACAACCAGCT TTGTTTAGTC ACGATGTTTT CCATAACATC
CGCTACGGTA ATCCAGATGC TACTGACGAG CAGGTCATTG AAGCAGCGAA GAAGGCACAT
GCTCATGAGT TTATCGAAAA GCTACCGGAT GGTTATCACA GCTTTTTGGG CGAGCGTGGT
GTGAGATTGT CTGGCGGACA AAAACAGCGC ATCGCCATTG CTCGTGCCAT TTTGAAAGAC
CCTAAAATCC TATTGCTTGA TGAAGCCACC AGCGCACTAG ACAGTGAAAG TGAACATCAT
GTTCAGCAGG CACTTGAGGC TCTGATGAAA GACAGAACGA CGCTAATCAT TGCCCACCGA
CTGTCGACTA TCCAACATGC GGATAAGATA GCCGTGTTAG ATGGTGGAGA GTTGATTGAT
ATCGGTAACC ACCAATCGTT GATGCAAAGC TGTGAGTTGT ACCAGCGTTT AGTTGCGTTA
CAGTTTAAGC ACTTAGAGTA A
 
Protein sequence
MSRKNNKNLS ILLKLNTFIS PHKWRVAAAL VALFATASLT LSVGYGVRML IDQGFAQQSQ 
QELTNAIQFI IGVTLCIAAG TFFRFYLVSS VGERVSADIR LAVFNHVMTL HPSYFETNSS
GDIMSRLTTD TTLLQSIIGS SFSMAMRSAI MCVGAIIMLF ATNFKLTLIV LASVPFVLVP
ILVFGRRVRA LSRKSQDTMA DVGSYAGEAI EHIKTVQSFS SEQHERAAFA VEVEKAYEVG
RQRVKQRAIL ISGVIVIVFS AIAGMLWVGG SDVIHGKMSG GDLAAFVFYA IMVASSTATI
SEVMGELQRA AGATERLIEI LQVESDITAP TNHMPITDTM PAEVTFDSVN FNYPSRPDQP
AVKGLNLTAE RGKVLALVGP SGAGKTTLFE LLQRFYDPQQ GRVLFGGEDI RQFDPNDLRN
QMALVPQQPA LFSHDVFHNI RYGNPDATDE QVIEAAKKAH AHEFIEKLPD GYHSFLGERG
VRLSGGQKQR IAIARAILKD PKILLLDEAT SALDSESEHH VQQALEALMK DRTTLIIAHR
LSTIQHADKI AVLDGGELID IGNHQSLMQS CELYQRLVAL QFKHLE