Gene VIBHAR_05960 details

Gene Information

• Locus tag: VIBHAR_05960
• ID: 5558905
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009784
• Strand: +
• Start bp: 1147155
• End bp: 1148900
• Gene Length: 1746 bp
• Protein Length: 581 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640910434
• Product: PTS system fructose-specific IIBC component
• Protein accession: YP_001448080
• Protein GI: 156977174
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1299] Phosphotransferase system, fructose-specific IIC component; [COG1445] Phosphotransferase system fructose-specific component IIB
• TIGRFAM ID: [TIGR00829] PTS system, fructose-specific, IIB component; [TIGR01427] PTS system, fructose subfamily, IIC component

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATTG CCATTATTAC AGCTTGTCCA AGTGGTGTTG CGAACAGCAT CATTGCGGCA 
GGCCTACTAG AACAAGCAGC AGCTAAGTTG GGTTGGAACG CTAAGATTGA ATGCCAATCA 
AACGTGGTTG AACCAACACT GCTAACAGAC GCTGACATTG AACAAGCAGA AGCGATCGTA 
ATTGCGGCTA ACACTCCAGT TGATACTTCT CGTTTCGTAG GTAAAAAAGT CTACCAAGCA 
GATATCAGCA CCGTTGCAAA AGACGCAATG GCTTTCCTAC AGACTGCGGT TGAAAACTCA 
GCAACACTAG AGCAAGCAAC CACAGATACG GCACAAGTAG CAGCACCAGC AGAAAGCGCA 
TCTGCAACGA AGAAGATCGT TGCGGTCACA GCATGTCCAA CTGGCGTAGC ACACACCTTC 
ATGGCAGCAG AGGCGCTAGA GGAAGAAGGC AAACGTCGTG GTCACCAAAT CAAAGTGGAA 
ACGCGTGGCT CAGTAGGTGC GAAAAACCAA CTGACTGATC AAGAAATCGC AGACGCAGAT 
TTAGTGATCA TCGCAGCGGA TATTGAAGTA CCTCTTGACC GCTTCAACGG CAAAAAAATG 
TACCGTACTA AAACAGGCCC AGCGCTGAAG AAAACAGCGG AAGAAATGGA CAAAGCGTTT 
GAACAAGCAA GCGTATACCA ACACTCTGGT TCTTCTAGCG CATCATCAAC GACAGAAGAG 
AAGAAAGGCG CGTACAAGCA CCTAATGACT GGTGTATCTC ACATGCTTCC AGTTGTGGTT 
GCAGGTGGTT TGATCATCGC CCTATCCTTC GTATTTGGTA TCGAAGCATT TAAAGAAGAA 
GGCACGCTAG CAGCAGCACT GATGAACATC GGTGGTGGCT CAGCATTCGC TCTGATGATT 
CCAGTGCTTG CTGGCTACAT CGCCTTCTCT ATTGCTGACC GTCCAGGTCT GGCTCCGGGT 
CTTGTGGGCG GTATGCTTGC TAGCTCAACC GGCGCAGGTT TCCTTGGTGG TATCGCAGCA 
GGTTTCATTG CCGGTTACGC AGCGAAGTTC CTAGCCGACA AAGTAAAACT TCCACAATCA 
ATGGAAGCGC TTAAACCGAT CCTTATCATT CCTTTCGTGG CGACACTGTT CACGGGTCTG 
GTGATGATTT ACATCGTAGG TGGTCCGGTT TCAGGCATCA TGAGCGGCCT AACTGACTTC 
CTAAACAACA TGGGTTCTGA CAGCGCAGTT CTACTGGGTA TTATCCTTGG CGCAATGATG 
TGTTTCGACC TAGGTGGTCC AGTAAACAAA GCCGCTTACG CATTCGGTGT GGGTCTATTG 
GCTTCGCAAA CTTACGCGCC AATGGCGGCA ATCATGGCGG CAGGTATGGT TCCTGCGCTT 
GGTATGGGTC TTGCGACATT CCTTGCTAAG AACAAGTTTG AGCAAAGCGA GCGTGAAGCG 
GGTAAAGCAT CATTCGTTCT TGGTCTGTGC TTTATCTCTG AAGGTGCAAT CCCATTTGCA 
GCGAAAGATC CAATGCGTGT TATCCCATCA TGCATGGCAG GTGGCGCACT AACAGGTGCA 
CTATCTATGC TGTTCGGTGC AAAACTGATG GCACCACACG GTGGCTTGTT CGTGCTGCTT 
ATCCCTAACG CAATCTCACC AGTCCTGATG TACTTGGTAG CAATTGCAGC AGGTACAGCG 
GTAACGGGCT TCACTTACGC GTTCCTAAAG AACAAATCAG AAGCGGAACA ACAAGCTGCA 
GCTTAA 

 

Protein sequence

MNIAIITACP SGVANSIIAA GLLEQAAAKL GWNAKIECQS NVVEPTLLTD ADIEQAEAIV 
IAANTPVDTS RFVGKKVYQA DISTVAKDAM AFLQTAVENS ATLEQATTDT AQVAAPAESA 
SATKKIVAVT ACPTGVAHTF MAAEALEEEG KRRGHQIKVE TRGSVGAKNQ LTDQEIADAD 
LVIIAADIEV PLDRFNGKKM YRTKTGPALK KTAEEMDKAF EQASVYQHSG SSSASSTTEE 
KKGAYKHLMT GVSHMLPVVV AGGLIIALSF VFGIEAFKEE GTLAAALMNI GGGSAFALMI 
PVLAGYIAFS IADRPGLAPG LVGGMLASST GAGFLGGIAA GFIAGYAAKF LADKVKLPQS 
MEALKPILII PFVATLFTGL VMIYIVGGPV SGIMSGLTDF LNNMGSDSAV LLGIILGAMM 
CFDLGGPVNK AAYAFGVGLL ASQTYAPMAA IMAAGMVPAL GMGLATFLAK NKFEQSEREA 
GKASFVLGLC FISEGAIPFA AKDPMRVIPS CMAGGALTGA LSMLFGAKLM APHGGLFVLL 
IPNAISPVLM YLVAIAAGTA VTGFTYAFLK NKSEAEQQAA A