Gene VIBHAR_05871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05871 
Symbol 
ID5556506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand- 
Start bp1061396 
End bp1061896 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content45% 
IMG OID640910345 
Producthypothetical protein 
Protein accessionYP_001447992 
Protein GI156977086 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTATCA AAGGTGAAAC TCAAGGTCAC ATCACTAAAG ATACTTACTC TGCAGATTCT 
GTAGGTAACA CATGGCAAGA AGCTCACGTT GATGAGTTCC TAGTTCAAGA ACTAGACCAC 
GTACTAACAG TACCACGTGA CCCACAAAGT GGTCAGCCTA CTGGTCAACG TGTTCACCGT 
CCACTTGTTG TAACTAAAGT TCAAGACCGT TGTTCTCCAC TACTATTCAA CGCACTAGTA 
TCTGGCGAAA AACTTCCTGA GTGTGTGATC CGTTTCTACC GTACTTCAGT TCAAGGTAAG 
CAAGAGCACT ACTACTCAAT CAAACTGATT GATGCACTAC TAGTAGACAT CCAAACTCGC 
ATGAACCACT GTCAAGACGC TGCAACAGCA GACCGCGTGA CAGAAGAAGT TCTTAAGCTG 
ACTTACCGTG CAATCGAAGT AACTCACGAA AACTGTGGTA CAGCTGGTAA CGACGACTGG 
CGTGCTCCAC GCGAAGCATA A
 
Protein sequence
MSIKGETQGH ITKDTYSADS VGNTWQEAHV DEFLVQELDH VLTVPRDPQS GQPTGQRVHR 
PLVVTKVQDR CSPLLFNALV SGEKLPECVI RFYRTSVQGK QEHYYSIKLI DALLVDIQTR 
MNHCQDAATA DRVTEEVLKL TYRAIEVTHE NCGTAGNDDW RAPREA