| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_05860 |
|---|
| Symbol | |
|---|
| ID | 5557610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 1047341 |
|---|
| End bp | 1049089 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640910334 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001447981 |
|---|
| Protein GI | 156977075 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAACA GTAAATACTT TCAAGATGAA CTCACGTATT TGCGTGAGTC GGGTAGTGAG
TTTGCCAAAT ATCATCCGAA GTTAACTCAC TTTCTCTCTG AAGGAACCTT CGACCCAGAC
GTCGAGCGAC TGCTGGAAGG TTTCGCTTTT CTGACTGGGC GTATTCGAGA GAAGATCGAC
GACGAACTGC CAGAACTCAC GCAATCTCTG ATGACTTTGC TGTGGCCGCA TTACATGCGT
TCAATTCCGT CTTTGTGCAT CAGTGAGCTA AAACCGCATA CCGGAAGTGT TACTGAGAAA
ACGGTGGTAA AACGTGGTGC AGAAATGGCC AGTGAGCAAG TCGAGGGCAC GCAATGCCTT
TTCCGCACTT GCTACGATGT GAACCTATAC CCAATCACGA TCACCAATAT TGAACAAACC
AACAGCCGCA CCAGTTCAGC GATTGATGTA ACGTTGTCGA CGGAGCATGG TCTAGAGCTG
TCTCGAATTG GTTTAGATAC GTTGCGTTTG CACTTGCATG GTGAAATTTA TGTTACTCGC
ACTGTGTTTC TCTGGCTGTT CCGCTACTTG GATTACGTGG AGCTGGATGT CGGTGGCGGC
TACAAACATC GCTTGGGGCC AGAATATGTC AAGCCGGTAG GGCATGAAGA AGACGAAGCG
CTGCTGCCTT ATAGCAAAAA CTCTTTCGCA GGATACCGCT TGTTGCAAGA GTTTTTCTCT
TTGCCTGAGA AGTTCATGTT CTTCGATATT CAAGGTCTAG AGTGGTTAAA AGGCATTCCT
CAGCGCAGTA CAGTGAAAGT GAAATTCTTC TTTAAGCGCG CATTGCCTTC AGAGGTTGTG
CTTAAAGATA AACACCTCAG GCTGCATTGT ACCCCTGCTG TGAACTTATT TGAAAAAGAT
GGCGATCCAA TTCGTTTGGA GCATCGTCGC AATGAATACA AAGTACGCCC TCAAAGCAAT
ACTCAAGACC ACTATGAAGT CTACGGAATT GAGCAGGTCG AGAGTTGGAG CAAAGACGAG
CGTCGCCGTA AACCATTGAT CGAATTCGAA TCGTTTGAGC ACCAAATTAA CCAGCGTGAT
AAGCGAGAGT TCTACAAATC AAAAGTCGGC GAGCGAGTAA GCGGAAGAGG GTTAGAGCGC
TATATTTCGT TCCATACGCA TAATGGTGAT ATTGCGGATT TAGGTACAGA AACTGTACTG
ATGAAACTGC AATGTAGCAA CGCCGATCTG GCTGAGCGCC TTTCAGTGGG CGACATTACT
TACGCGACCC ACAAATCGCC GACGTACGCG ACATTTAAAA ATATCACCAA GCCGACACAA
TCGGTGAGCC CACAGGTGAA CGGTGAGCTT CAGTGGCAGC TGATCGCCAA TATGTCACTC
AACTATTTGT CATTGGCGAA CATTGATGTG TTGAAAGTGC TGCTCTCGAC TTATGACTTC
CATTCTCGTG TCGATAGACA AGCTCACCGC GCGTCGATTC ACCGACTCGA TGGTATTGTG
TCGTCTGAGA TGAAACCGAT TGACCGCGTG TTCCGTGGCG TATCTGTACG TGGTAACCAA
TTTAAGCTGG TGACCAATTC GAAGTTCTTC GTAAATGAAG GCGATATGTT CCTGATGGCA
ACCGTACTCA ATGAATTCAT CCGTTTGTAT TCGAGTGTGA ACTCCTTTAC TGAATTGGAG
GTCTTTGATG AAGCGACAGG TGAAGTGTAC AACTGGGCAA GCCTGATTGG ACAGCAGACG
ATTCTATGA
|
|---|
| Protein sequence | MSNSKYFQDE LTYLRESGSE FAKYHPKLTH FLSEGTFDPD VERLLEGFAF LTGRIREKID
DELPELTQSL MTLLWPHYMR SIPSLCISEL KPHTGSVTEK TVVKRGAEMA SEQVEGTQCL
FRTCYDVNLY PITITNIEQT NSRTSSAIDV TLSTEHGLEL SRIGLDTLRL HLHGEIYVTR
TVFLWLFRYL DYVELDVGGG YKHRLGPEYV KPVGHEEDEA LLPYSKNSFA GYRLLQEFFS
LPEKFMFFDI QGLEWLKGIP QRSTVKVKFF FKRALPSEVV LKDKHLRLHC TPAVNLFEKD
GDPIRLEHRR NEYKVRPQSN TQDHYEVYGI EQVESWSKDE RRRKPLIEFE SFEHQINQRD
KREFYKSKVG ERVSGRGLER YISFHTHNGD IADLGTETVL MKLQCSNADL AERLSVGDIT
YATHKSPTYA TFKNITKPTQ SVSPQVNGEL QWQLIANMSL NYLSLANIDV LKVLLSTYDF
HSRVDRQAHR ASIHRLDGIV SSEMKPIDRV FRGVSVRGNQ FKLVTNSKFF VNEGDMFLMA
TVLNEFIRLY SSVNSFTELE VFDEATGEVY NWASLIGQQT IL
|
|---|
| |