Gene VIBHAR_05653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05653 
Symbol 
ID5558750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp860672 
End bp861811 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content46% 
IMG OID640910129 
Producthypothetical protein 
Protein accessionYP_001447783 
Protein GI156976877 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTTA TCCATACCTC AGATTGGCAC CTTGGCCGAC AGTTTCATAA CGTCTCTTTG 
CTTGGCGATC AGCAAGCGGT TCTCGACCAG TTAATCCAAT ACGTTGAAGA CAACCCTGTT 
GATGCGGTGG TGGTGGCTGG TGATATTTAT GACCGTTCTG TCCCACCAAC CATTGCGATT 
GAACTACTTA ACAAAGTAGT GAAGCGAATC TGTGGTGAGC TAAATACGCC GATGATTCTG 
ATTTCTGGCA ACCATGATGG TGCTGAACGT TTGGGTTTTG GTTCAGAACA GATGAAAAAT 
GCGGGCCTTC ACATTATCAG TAACTTCGAA GACATGCTTA CCCCTGTTGT TATTGAAACC 
GAAAGCGCAG GGCAAGTTGC TTTTTATGGC ATGCCTTATA ACGACCCTGA GCAAGTCCGT 
TTTGCCTACC AAGAACCCGT TTCGACCCAC GATCAAGCGC ACAAGTTACT TGCAGAGAAA 
ATCACGGAGC AGTTCCAACC AGAACAACGC AACGTGTTAG TCAGCCACTG CTTTGTCGAT 
GGTGCCATTG AGTCTGAATC TGAGCGTCCA CTTTCGATTG GCGGTTCCGA CCGTGTCAGT 
CACGAGCATT TTCTCAACTT TGACTATGTA GCGTTGGGGC ATTTGCACCA GCCACAGAAA 
AAAGGCGAAG AGTACATTCG TTATTCTGGT TCACTGATGA AATACAGTTT TGGTGAACAA 
AACCAGAAGA AAGGTTTCAC GCTGGTGGAA ATTGACCAAA ATGGTTTTGT ATCGGCAGAG 
CATATTGACC TTGCCGCACC TCATGAGATG CGAATCGTTG AAGGCGAACT TGAACAAGTA 
ATAGAGCAGG GCAAAACCGA TCCGAAAAAC GAAGACTACC TGTTGGTACG TTTGATGGAT 
AAGCACGCGA TCTTAAACCC AATGGAAAAG CTACGTACTG TTTACCCAAA TGTTTTGCAC 
CTAGAAAAGC CGGGCATGTT AATTGGTGTC GAGCAGGAAA TGGCGCAAGC GAAGTTGGCG 
AGAAGTGAGA TAGACATGTT CCGAGATTTC TTTTCGGAAG CGCAAGACGG CCAATTATCG 
CAAGAACAAG ATCAAGCGAT CAGTGACATT ATCAAACAAC TTTCTCAGCA AGCTCAGTAA
 
Protein sequence
MKFIHTSDWH LGRQFHNVSL LGDQQAVLDQ LIQYVEDNPV DAVVVAGDIY DRSVPPTIAI 
ELLNKVVKRI CGELNTPMIL ISGNHDGAER LGFGSEQMKN AGLHIISNFE DMLTPVVIET 
ESAGQVAFYG MPYNDPEQVR FAYQEPVSTH DQAHKLLAEK ITEQFQPEQR NVLVSHCFVD 
GAIESESERP LSIGGSDRVS HEHFLNFDYV ALGHLHQPQK KGEEYIRYSG SLMKYSFGEQ 
NQKKGFTLVE IDQNGFVSAE HIDLAAPHEM RIVEGELEQV IEQGKTDPKN EDYLLVRLMD 
KHAILNPMEK LRTVYPNVLH LEKPGMLIGV EQEMAQAKLA RSEIDMFRDF FSEAQDGQLS 
QEQDQAISDI IKQLSQQAQ