Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_05615 |
Symbol | |
ID | 5558813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | + |
Start bp | 819075 |
End bp | 822614 |
Gene Length | 3540 bp |
Protein Length | 1179 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640910091 |
Product | type I site-specific deoxyribonuclease |
Protein accession | YP_001447745 |
Protein GI | 156976839 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGAGT ACCAATTGGT AGAAAAGCCG CTGCTAAACC AGCTTAAAAG CATGGGCTGG GATGTGATGG ATTTAGGGCA AGGTGTGCCG ACCGACCCAA CCACCAGTTT TCGCGGCTCT TTTCGTGAAG TCATCTTAAA AGACATTTTT AAAACCGCAG TACATCGCAT CAACACCACT GATGATGGTA AGCCCTGGCT GACGGATAGC CAACTCGATG TTTTGCTCGA TGATGTCACC GACTTTGGTA CTCACGAGTT GCTGGCGGCC AATGAGGAGT TTATTGGCCG TCTACACAAA TGGCAACTTG ACCGTAACGA GCTGACCGGA GAAGAAGACC CTGTTGTAAA ACTGATTGAT TTTGATAATT GGAAAAACAA CACCTTCACT GCCATCAATC AGTTCCGTGT TGATACCCCT GGGTTGGGGA AAGAGCACAT TCGCCCTGAC ATTGTATTGT TCGTCAACGG CCTGCCGCTG GTGGTGATTG AGTGTAAAGT GCAGTCACAG CATTGCTGCA ACCCAATGGC AGCAGGCATT GACCAATTGC GCCGGTATGC CGACTTGCGC GAGCCTCAAC ACAGCAAACT GCGCGAGGGT GAACCCGCTT TGTTCTTTAC CAACCAGTTG ATGATCAGCA CCTATGGAGA TGATTGCAAA GTGGGCACCA TCACTTCAAA TGAAGATTAC TACTTCAACT GGAAAACCAT CTACCCCGAT ACTGAGCCCT ATATTGCACC GGAAATTGGC ACCCATCGCA TCCAGGAAAA GCTCGTTCAG GGCATGCTTC ACCCACAAAG ACTGCTTGAT ATCACTCGTT GTTTTACCCT GTTTATGGAT ACCGACAACG GCCCACGTGT GAAAGTAATT TGCCGATACC AGCAATTTCG CGCGGTGCAG AAAATCATTG AGCGTATGGA GCAAGGCGAA ACGGGGATTC AGCGTTCAGG CGTAGTTTGG CATACCCAGG GAAGCGGAAA AAGCCTGACC ATGGTGTTCT TGGTTCGTAA GCTTCGTCGC CATCCTGATC TGAAAAGCTA CAAAGTGCTG ATGGTCAACG ACAGAAACGA TCTTGAAGAG CAGCTCACTA ATACAGCGGC CTTAATTGGT GACAAAGTTG TTGTCATTAA AAATACGAGA GATGCTAAGG CGGAGCTTGC AAACGATACG TCAAATACCA ATATGGTGAT GGTGCATAAG TTTCGCGAAC AAGATAGTGG TTTCCTACCT GAGTCTGTGC GTAGGCTTTT GTCTAAACAG CTTGCGGAAG CGCAAGAAGC CGGTGATGTT GAGCACATCG AAGAGCTAGA ATCAGACTTT GATGCAGAGA TCGTCATACA TCAGCCTTTC GGCGTGATCA ATGAAGGCGA AAAAGTACTG ATCTTGGTGG ACGAAGCGCA CCGCACCCAG CGAGGCGGCA AAGACCGTCC AAGCCTTTCA GATAACTTGT TTGATGCATT CCCGAACTCG ACCCGAGTGG CGTTTACAGG AACACCGCTC ATCGCGGACC ACCATACTTA TCCAACCTGG AAGCGCTTTG GAGTCAATCA TGAAAAAGCC TATATAGACA AGTACAAACT TCAGGATGCG GTCGATGATG GCGCGACGTT AAAAATTCTC TACGAAGGTA AAACCGCAGA CAGTGCGATT TACGATAAAG CGGGGTTTGA TACCAAGTTT GAAGATCTTT TTGCGGACAG AACGGAAGAA GAACTAAGAG AGATCCGTAA AAAGTATGGT GCGGAAGGGG ATATTCTTGA GGCAGAAAAG CGCATTGAGG AAATTGCTGA GGACCTAGTA AAGCACTACA CACGGCAGAT TTTTCCAGCA GGCTTTAAAG CGCAAGTAGT GTGTTCTTCC AAGCAAGCAG CTATTCATTA CCAAACCTAT ATTGAAAAGG CACTGGCGAA AGAAATCGAG TTATACAAAA AGCAGCCAGA GCAATGTATC GATAAAGCTT GGCTTGAGCG CCTTGAGTTT TTGAAAACGG CGGTTGTGAT TTCAAGTGAT GACACCAATG AAGCAGCTTC TTTCACATAC GCCAGAAAGC AGGCCAAAGA ATTAAAAGCT GTCGATAACT TCAAGAAGAA GTTTGATCAC AGCAAGCCAA ATACCGGCGT CGCTTTCTTG ATTGTCTGCG ACATGCTGTT AACGGGCTTC GATGCGCCAA TTGAACAGGT GATGTATCTC GACAAGAAAC TGCGAGAGCA TAATTTGCTG CAAACCATTG CCCGTGTAAA CCGCACCGCG AAAGAGAAAA AACGTGGCTA TGTTGTCGAT TATATTGGTC TTGCTCATCA CTTGAGAGAT GCGCTGTCGA TGTACTCTCA AGATGATCAA AACGACATCA TGGAAAGTAT GCAGAGCATT GATAGCGAAG TGCCGGTGTT GGAAAGTCGT TATCGCCGTA TGCTTCAGCT ATTTTCCGAA CTCGATGTTC ATAACATCGA AGCATTTGTG AACCAGAAAC TTAGTGTGGA TGAGCACTAT CAAGTGCAAC TTCAGGCGAT TTCTGTTTTA GAAGACCCTC GCCAGCGTGA CAGTTTCAAC GTGTTCTTGA AGAAGTTTCT TCAGAGCATG GACATCATCA TGCCGAACTC CTTGGCAGAT CCTTACAAAA CGCCGATGTA CCAGTTTGTG CATATTCAAG CGAAAGCGCG TCAACGTTAT CAAGATGACA GTATGAGTTT CCAAGGTGTG GGTGCAAAGA TTCGCCATCT AGTAAATGAA CACCTGATTA GCCTTGGTAT TAACCCCAAA GTTAAGCCTA TCGACTTGTT CAGTGATGCG TTTATGACCC ACATGGGAAA AGAGCCGGAC TTACAAGCGC AAGCGAGTGA AATGGAACAC GCCATTCGTA AGCACTGCAA AGTCAATGCG GATGATGACC CAGTTTTCCA CAAAAAAATG AGTGAGAAGC TGGATGAGAT AATCAAAAAG CACTCTGGTA ACTGGGAAAA GATGATCCTA GAGCTAAGTG CTTTGCGAGA TGAAATCGAC GCGGGGCGTG GTCCTAACTC TCAGGTATCC GACCCATTCT TTGATTTGAT TGTCAGTATT GCATTCCCGG ATGGCGAGCC TGTTAAGCCT CTGGACAAGG TGAAAGCCTG TGTCGACGCC ATTATGGAAG AGCTAGGCGA GAATATCAGT AGCCTAGACT TCTGGGAGCG TGAGGACTTA GTGTCTGAGC TGAGAGGGCG CATCAAAAAG CGCTTTATTC TCAGCAAAGT GCCACAGCTT AAAGACGCAC GTGAACAGCT AACTATTGAG GTAGTGGCGC TGGCGCGTAG ACGGGAGCAA ATGCTCTTGT CGGATCATGA GCTGAACATC AAAATTGAAA GGCTCATTAA CGCCATAAAA GAACTAAAGA TAACAGGTAC AGAGGAAGAC GATCGAAGAG TACTGGATAT GCTGAAATAT TCGGTATGTG GCGCGGAGCT CTATTTAGCA AGCGAACTTG AACAATATGA GCAGTTTATC CGTGTGGCTT CTGTGACTGT CAGAACGGAT ATCGACGTTC CCAATGCGCC TGAAGCCTGA
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Protein sequence | MSEYQLVEKP LLNQLKSMGW DVMDLGQGVP TDPTTSFRGS FREVILKDIF KTAVHRINTT DDGKPWLTDS QLDVLLDDVT DFGTHELLAA NEEFIGRLHK WQLDRNELTG EEDPVVKLID FDNWKNNTFT AINQFRVDTP GLGKEHIRPD IVLFVNGLPL VVIECKVQSQ HCCNPMAAGI DQLRRYADLR EPQHSKLREG EPALFFTNQL MISTYGDDCK VGTITSNEDY YFNWKTIYPD TEPYIAPEIG THRIQEKLVQ GMLHPQRLLD ITRCFTLFMD TDNGPRVKVI CRYQQFRAVQ KIIERMEQGE TGIQRSGVVW HTQGSGKSLT MVFLVRKLRR HPDLKSYKVL MVNDRNDLEE QLTNTAALIG DKVVVIKNTR DAKAELANDT SNTNMVMVHK FREQDSGFLP ESVRRLLSKQ LAEAQEAGDV EHIEELESDF DAEIVIHQPF GVINEGEKVL ILVDEAHRTQ RGGKDRPSLS DNLFDAFPNS TRVAFTGTPL IADHHTYPTW KRFGVNHEKA YIDKYKLQDA VDDGATLKIL YEGKTADSAI YDKAGFDTKF EDLFADRTEE ELREIRKKYG AEGDILEAEK RIEEIAEDLV KHYTRQIFPA GFKAQVVCSS KQAAIHYQTY IEKALAKEIE LYKKQPEQCI DKAWLERLEF LKTAVVISSD DTNEAASFTY ARKQAKELKA VDNFKKKFDH SKPNTGVAFL IVCDMLLTGF DAPIEQVMYL DKKLREHNLL QTIARVNRTA KEKKRGYVVD YIGLAHHLRD ALSMYSQDDQ NDIMESMQSI DSEVPVLESR YRRMLQLFSE LDVHNIEAFV NQKLSVDEHY QVQLQAISVL EDPRQRDSFN VFLKKFLQSM DIIMPNSLAD PYKTPMYQFV HIQAKARQRY QDDSMSFQGV GAKIRHLVNE HLISLGINPK VKPIDLFSDA FMTHMGKEPD LQAQASEMEH AIRKHCKVNA DDDPVFHKKM SEKLDEIIKK HSGNWEKMIL ELSALRDEID AGRGPNSQVS DPFFDLIVSI AFPDGEPVKP LDKVKACVDA IMEELGENIS SLDFWEREDL VSELRGRIKK RFILSKVPQL KDAREQLTIE VVALARRREQ MLLSDHELNI KIERLINAIK ELKITGTEED DRRVLDMLKY SVCGAELYLA SELEQYEQFI RVASVTVRTD IDVPNAPEA
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