Gene VIBHAR_05361 details

Gene Information

• Locus tag: VIBHAR_05361
• Symbol: secD
• ID: 5556809
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009784
• Strand: +
• Start bp: 590412
• End bp: 592250
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640909838
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001447493
• Protein GI: 156976587
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA CACCAAAACC ACAAAAGAAC AGAAAAGTGC TGAATCATTA CTCAGCATGG 
AAATACGTCG TACTTATTAC GACCGTTATT ATTTTAACCT TGAGCGCGAT CCCAACCTGG 
TTTGGTGAGC AGCCTTCTAT TCAGGTCACG TTTGCTGACC AAAGCAACAG TGCGATGTCA 
GTGGTCCAGC TAGACCAACT GTTGAAAACG CATCATATTC CTGCGTCTAA GATCATTGAG 
AAAGACGGAA AAACCACCAT CGTTTTTGAT GGCGAAGACG CGCAAAGTAA AGCACGCGCA 
TTGCTTAACG AGCAGCTAGA CAAAGACGAC AGCATTACGT TCTCTTACGT TTCTGTTGCA 
CCTGAATGGT TGAATGAAAT GGGCTTTAGC CCGATCAAAC TTGGTCTTGA CCTTCGTGGC 
GGCGTGCAAT TCCTACTAAA CGTAGATGTG AACAAAGCGT TCGAGGAACA ACGTGATGCA 
TTGGTTGATG AGATCAAAGC AAATCTGCGT GAAGAGCGTA TTCGCGGTGT TCAAGTTCGT 
GCAGAGGCGC ACAACCACAT CGCAGTAAAC AGCGAGAACG AAGCGGGTCT CAAAGCGGCA 
AGCCAATTCA TTCGTCAAAA CTACCCTGGT TGGACAATGA CTGGCTCAGA TCGCGGCTTT 
GAGCTTCAGC CAAGTGAACA GAACATCCAA GAATTCCAAA CCACAACACT TCAACAAAAC 
TTGAAGATCA TGCGTGGTCG TATCGAAGAG CTGGGTATTA CAGAAGCGTT GGTTCAACGC 
CAAGGCAAAG AGAGTATCCG TATTGAGCTT CCAGGTGTTC AAGATCCAGC ACAAGCGAAA 
AACGTTATCG GTGCAACAGC CAGCCTTGCG TTCTATGAAG TAAAAGACGC AGGTCAAGCT 
CGTAGTAGCC AAGACCTTGT ATTGAAAGAC AACGACGGTC GTACAGTAAT TCTGACTAAG 
CGCCCAGTAT TAACGGGTGA GCACATTGTA AACGCACGTG CTGGCGTCGA CAAAATGGGT 
ATGTCAGAAG TAAACATCTC TCTAGACCAC GCGGGTGGCA AGAAGATGAG TGACTTCTCT 
GCAACACACA TCGGCAAACC AATGGCGACC GTATACCGCG AGTACAAAAC GGACGAACGT 
GGTATGACAG AGCGTAGTGA GCGTGTCATC AGTGTAGCAA CTATCCAGTC TCAACTTGGT 
AGCCAATTCC GCATCACAGG TGCGGGTAGC ATGGATGAAG CACAACAGCT TGCGCTGCTT 
CTGCGTGCGG GCTCTCTAAC AGCGCCAGTG ACGATCGTTG AAGAACGTAC AATTGGTGCA 
TCTCTAGGTG CAGAAAACAT CCAAAACGGT TTTGCTGCTC TAGCACTAGG TATGGGTCTA 
ACCCTGACAT TTATGGCGCT TTGGTACCGT CGTCTTGGTT GGGTCGCGAA CGTGGCTTTG 
TGTGCAAACA TGCTTTGCTT GCTTGGTCTA ATCGCACTGC TTCCTGGCGC CGTGCTAACG 
CTTCCTGGTA TTGCTGGTTT GGTTCTGACT GTCGGTATGG CGGTGGATAC CAACGTGATT 
ATCTTTGAAC GCATCAAAGA CAAAATGCGT GAAGGCCGCA GCTTCGCTCA AGCGATCGAC 
CTCGGCTTCG ACAGTGCATT CGCAACTATC CTTGATGCCA ACATCACCAC CATGATCACT 
GCTGTGATTC TATACGCGAT TGGTAACGGT CCAATCCAAG GCTTCGCGCT AACGCTAGGC 
TTGGGTCTGA TGACCAGTAT GTTTACAGGC GTATTCGCTT CTCGTGCAAT GATCAATTTA 
ATTTGGGGCC GCGATGGCCG TCGTGATGTG AGGGTTTAA 

 

Protein sequence

MKKTPKPQKN RKVLNHYSAW KYVVLITTVI ILTLSAIPTW FGEQPSIQVT FADQSNSAMS 
VVQLDQLLKT HHIPASKIIE KDGKTTIVFD GEDAQSKARA LLNEQLDKDD SITFSYVSVA 
PEWLNEMGFS PIKLGLDLRG GVQFLLNVDV NKAFEEQRDA LVDEIKANLR EERIRGVQVR 
AEAHNHIAVN SENEAGLKAA SQFIRQNYPG WTMTGSDRGF ELQPSEQNIQ EFQTTTLQQN 
LKIMRGRIEE LGITEALVQR QGKESIRIEL PGVQDPAQAK NVIGATASLA FYEVKDAGQA 
RSSQDLVLKD NDGRTVILTK RPVLTGEHIV NARAGVDKMG MSEVNISLDH AGGKKMSDFS 
ATHIGKPMAT VYREYKTDER GMTERSERVI SVATIQSQLG SQFRITGAGS MDEAQQLALL 
LRAGSLTAPV TIVEERTIGA SLGAENIQNG FAALALGMGL TLTFMALWYR RLGWVANVAL 
CANMLCLLGL IALLPGAVLT LPGIAGLVLT VGMAVDTNVI IFERIKDKMR EGRSFAQAID 
LGFDSAFATI LDANITTMIT AVILYAIGNG PIQGFALTLG LGLMTSMFTG VFASRAMINL 
IWGRDGRRDV RV