Gene VIBHAR_04932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_04932 
Symbol 
ID5558173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp197438 
End bp198481 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content45% 
IMG OID640909411 
ProductTRAP-type C4-dicarboxylate transport system periplasmic component 
Protein accessionYP_001447067 
Protein GI156976161 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT TAAGCGCGGC AATTTTAAGC TTAGGTGTTG TGTTTGGTGT TCATGCCGAA 
ACATGGAAGT TTGCTTCAGA AGAGGACAAA ACTGACGTTC AAGATATTCA CGCTCAGAAG 
TTTGCCGAGG TGATCAAGAA AGAGTCGGAT GGTGACATTC GTGTTCGTAT TTATTACTAC 
GGGCAGTTGG GTACGGAAAA CGACATAGTC GAGCTTGCCG CGAAAGGTAC CATCCAGTTT 
GTTTCAGTTG GGGCTGGGCA TTTGGGGTCT TACGTGCCTG AAGTACAAGC TGTGAGCTTA 
CCGTATGTGC TGGGGACGGA TGAGAAAATC ACGCATCAAG TCTTAACGAA AAGCCCGACG 
ATTTATAATC AACTTGCTCC TAAGTTTGAG AGTGTGAACC TAAAATTGCT GTCCATGATG 
TCTGAAGGCG AGATGGTTTG GGGAGGCAAC AAACCGATCC GTACGCCAGA GGATTTTGCC 
AATCAGAAGA TCCGAACGTT CACTTCAACC ATTCCTGTTG AAACTTATAA AGCCTTTGGA 
GCAACTCCAA CGCCATTGTC TTGGGGAGAA GTTTATGGCT CTCTTCAACT GAAAACGATT 
GATAGCATGG TCAACCCAAT CTACTTCATA TACAACGCGA AATGGCATGA AGTTCAGGAC 
TATTTGATGT TCCCAGGGCA GCAGCCTTAT GTGAGTACCG TATCGACCAA CAGCAAGTGG 
TACAACGGCT TGTCTAAGGA GAAGCAAGCC ATGGTTGATA AAGCGATCAA AGCCGCAGAT 
CAGGCTGTCT ACGATTACCA AATTCGCATC AACAAAGAAA ACATGGAGAA GATCCTTAAA 
GAGCGCCCAG ATCTTGAAGT GGTGATTCTA TCTGAAGAAG AAAGAGAGCG CTTTAAAGTG 
CTGAGTGAGC AGCTTCATGA TACCTATTTT GATGTTGTCG CGAATGCTTA TCCGACAGAC 
CAGCAGGCTG AAGCTCGCCA AGGAGCAAAA GTCATTCTTG AAAATATCTT AGATGAAGTG 
CGTGTGGCAT CTAAAACGCA ATAA
 
Protein sequence
MKKLSAAILS LGVVFGVHAE TWKFASEEDK TDVQDIHAQK FAEVIKKESD GDIRVRIYYY 
GQLGTENDIV ELAAKGTIQF VSVGAGHLGS YVPEVQAVSL PYVLGTDEKI THQVLTKSPT 
IYNQLAPKFE SVNLKLLSMM SEGEMVWGGN KPIRTPEDFA NQKIRTFTST IPVETYKAFG 
ATPTPLSWGE VYGSLQLKTI DSMVNPIYFI YNAKWHEVQD YLMFPGQQPY VSTVSTNSKW 
YNGLSKEKQA MVDKAIKAAD QAVYDYQIRI NKENMEKILK ERPDLEVVIL SEEERERFKV 
LSEQLHDTYF DVVANAYPTD QQAEARQGAK VILENILDEV RVASKTQ