Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_03664 |
Symbol | |
ID | 5554906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | + |
Start bp | 3692802 |
End bp | 3694277 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640909143 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001446805 |
Protein GI | 156975898 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCTT CATTACAACT CAAGCTAGGT CAACAGTTAG CCATGACGCC ACAGCTGCAG CAAGCGATTC GTTTGTTGCA ATTGTCGACG CTCGATCTTC AACAAGAAAT CCAAGAAGCG TTGGACTCCA ACCCGCTACT GGAAGTTGAA GAAGGCCACG ATGAGCCTCA AGCAAATGGT GAAGACAAAT CAGCGTCTGA ATCTGCTGAT AAAAGTGCGA ACGAAGCTAA CGATGCCTCA GAACCCGACC TTCCAGATAG CTCAGACGTG ATTGAAAAAT CTGAAATCAG CTCTGAGCTA GAAATTGATA CCACTTGGGA TGACGTATAT AGCGCAAACA CGGGCAGCAC AGGCCTAGCG CTGGATGATG ACATGCCCGT CTACCAAGGT GAGACCACTG AATCTTTGCA TGATTACCTT ATGTGGCAGT TAGACTTAAC GCCTTTCAGT GAAACCGACC GCACCATCGC CCTCGCGATT ATCGATGCGG TCGACGACTA CGGCTACTTA ACCCTATCCC CTGAAGAAAT TCACGAGAGC TTCGACAACG AAGAAGTGGA ATTGGATGAA GTAGAAGCGG TACGTAAGCG TATTCAGCAA TTTGACCCGC TCGGTGTAGC CTCTCGCAAT CTGCAAGAAT GCCTACTGCT ACAACTGGCA ACTTTCCCTG AAGACACGCC GTGGCTTGCT GAGGCGAAAA TGGTGTTGAG CGATCACATC GACCACCTTG GCAATCGTGA CTACAAGCTG GTCATCAAAG AGGCTAAGCT TAAAGAAGCG GACTTGCGTG AAGTATTGAA GTTGATTCAA CAACTTGACC CACGTCCAGG TAGTCGTATC ACACCCGATG ACACTGAATA CGTCATTCCG GATGTGTCCG TATTTAAAGA TCATGGTAAG TGGACCGTCT CCATAAACCC TGACAGCATT CCGAAACTAA AAGTAAATCA ACAATATGCG CAACTAGGCA AAGGCAACAG TGCGGATAGC CAGTACATTC GCAGCAATTT GCAAGAGGCA AAATGGCTGA TTAAGAGCCT AGAAAGCAGA AACGAGACGC TTCTCAAAGT TGCAAGATGT ATTGTTGAAC ATCAACAAGA TTTCTTCGAG TATGGTGAAG AAGCCATGAA ACCAATGGTG CTAAACGACG TAGCATTGGA TGTGGACATG CATGAATCGA CAATTTCTCG TGTAACAACA CAGAAGTTTA TGCATACCCC ACGTGGCATT TTTGAATTGA AGTACTTCTT CTCTAGCCAT GTTAGTACAG ACAATGGTGG AGAGTGTTCG TCCACAGCAA TTCGCGCACT CATCAAAAAG TTGGTCGCAG CGGAGAATAC CGCTAAGCCA CTGAGTGATA GCAAAATTGC TGCTCTTCTG GCTGACCAGG GGATTCAAGT CGCGAGACGG ACGATAGCAA AATATCGTGA ATCCTTGGGT ATTGCCCCTT CGAGTCAGCG TAAACGCCTA CTTTAG
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Protein sequence | MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EGHDEPQANG EDKSASESAD KSANEANDAS EPDLPDSSDV IEKSEISSEL EIDTTWDDVY SANTGSTGLA LDDDMPVYQG ETTESLHDYL MWQLDLTPFS ETDRTIALAI IDAVDDYGYL TLSPEEIHES FDNEEVELDE VEAVRKRIQQ FDPLGVASRN LQECLLLQLA TFPEDTPWLA EAKMVLSDHI DHLGNRDYKL VIKEAKLKEA DLREVLKLIQ QLDPRPGSRI TPDDTEYVIP DVSVFKDHGK WTVSINPDSI PKLKVNQQYA QLGKGNSADS QYIRSNLQEA KWLIKSLESR NETLLKVARC IVEHQQDFFE YGEEAMKPMV LNDVALDVDM HESTISRVTT QKFMHTPRGI FELKYFFSSH VSTDNGGECS STAIRALIKK LVAAENTAKP LSDSKIAALL ADQGIQVARR TIAKYRESLG IAPSSQRKRL L
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