Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_03517 |
Symbol | |
ID | 5553112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 3566747 |
End bp | 3567733 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640908997 |
Product | hypothetical protein |
Protein accession | YP_001446680 |
Protein GI | 156975773 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATCA GCAACACAGT AACCAAAGTT GAAGAGTTCG AATATGACAA TGCATCAACG GAAGGCATTG CTAACAACGA GCTTGAAAAA ACATCCAACC GAACCAAAAC AGCAGCACGC GAAGAATTCG ACGCGAGCAG CAAGAGCCTA GATGCTACTC AGCTTTACTT AGGCGAAATT GGTTTTTCAC CTCTACTTAC GGCAGAAGAA GAAGTACTTT ATGCTCGACG TGCGCTGCGT GGCGATGAAG CTGCTCGCAA ACGTATGATC GAAAGTAACT TGCGTCTTGT AGTGAAGATC TCTCGTCGAT ACAGCAATCG TGGTCTAGCA CTTCTTGATC TCATTGAAGA AGGTAATTTA GGTCTGATTC GTGCGGTAGA GAAGTTTGAT CCAGAAAGAG GCTTCCGTTT CTCAACTTAC GCGACGTGGT GGATTCGCCA AACGATCGAA CGTGCGTTGA TGAATCAAAC TCGTACAATC CGTCTGCCAA TTCATGTGGT TAAAGAGCTG AACATTTATC TGCGTACTGC GCGTGAACTT TCTCAGAAGC TCGACCATGA ACCAACAGCA GAAGAGATTG CTGCACAGTT AGATATCCCA GTAGAAGACG TAAGCAAAAT GCTTCGCCTT AATGAGCGCA TTAGCTCTGT CGATACACCG ATTGGTGGTG ACGGCGAGAA AGCGCTACTG GATATTATTC CTGATGCCAA CAACTCGGAT CCTGAAGTTT CCACTCAGGA CGATGACATC AAATCTTCAT TGATCCATTG GCTAGAAGAG CTGAATCCAA AACAGAAAGA AGTGCTAGCG CGTCGTTTTG GTCTGCTTGG CTATGAGCCA TCAACACTTG AAGAAGTGGG ACGTGAGATT GGTCTAACAC GCGAACGTGT TCGTCAGATC CAGGTGGAAG GTTTACGTCG ACTACGCGAG ATCTTGATCA AACAAGGTCT GAATATGGAA AACCTGTTCA ACGTTGAAGA CGACTAA
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Protein sequence | MSISNTVTKV EEFEYDNAST EGIANNELEK TSNRTKTAAR EEFDASSKSL DATQLYLGEI GFSPLLTAEE EVLYARRALR GDEAARKRMI ESNLRLVVKI SRRYSNRGLA LLDLIEEGNL GLIRAVEKFD PERGFRFSTY ATWWIRQTIE RALMNQTRTI RLPIHVVKEL NIYLRTAREL SQKLDHEPTA EEIAAQLDIP VEDVSKMLRL NERISSVDTP IGGDGEKALL DIIPDANNSD PEVSTQDDDI KSSLIHWLEE LNPKQKEVLA RRFGLLGYEP STLEEVGREI GLTRERVRQI QVEGLRRLRE ILIKQGLNME NLFNVEDD
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