Gene VIBHAR_03479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03479 
SymbolrimM 
ID5555963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp3533150 
End bp3533698 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content43% 
IMG OID640908959 
Product16S rRNA-processing protein RimM 
Protein accessionYP_001446651 
Protein GI156975744 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGATGA AAGGTAAAGA AACAATGAGC AACGAAAAGA TTGTTGTAGG CAAGTTTGGT 
GCTACTTACG GCATTCGTGG TTGGCTTAAG GTTTTTTCCT ACACAGACAA TGCTGAAAGC 
ATTTTCGATT ACAGCCCTTG GTTTATTAAT CAAAAGGGTA CGTGGGTTGA GTACAAAGTA 
GAGAGCTGGA AGCGCCATAA CAAAGGTATG GTGGCTAAGC TGGAAGGTCT GGATATTCGC 
GAAGACGCGC ATTTACTGAC GAACTTTGAA ATTGCTATTG ACCCTGCGGT ACTGCCTGAA 
TTGTCAGAAG ATGAATTCTA CTGGCGTGAA TTGTTTGGGA TGCAAGTAGT AACCACTAAA 
GGTTACGATC TAGGTGTCGT ATCTGACATT CTAGAAACTG GCTCAAACGA TGTTCTGGTT 
GTTAAAGCAA ATCTAAAAGA TGCTTTCGGG CAGAAGGAAC GATTAATTCC GTTCCTTGAA 
GAGCAAGTGA TCATCAAAGT TGATCGCGAA GCTCAACGGA TCGAAGTTGA CTGGGATCCT 
GGATTCTAA
 
Protein sequence
MSMKGKETMS NEKIVVGKFG ATYGIRGWLK VFSYTDNAES IFDYSPWFIN QKGTWVEYKV 
ESWKRHNKGM VAKLEGLDIR EDAHLLTNFE IAIDPAVLPE LSEDEFYWRE LFGMQVVTTK 
GYDLGVVSDI LETGSNDVLV VKANLKDAFG QKERLIPFLE EQVIIKVDRE AQRIEVDWDP 
GF