| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_03106 |
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| Symbol | mnmC |
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| ID | 5553756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | + |
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| Start bp | 3132377 |
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| End bp | 3134395 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640908587 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001446282 |
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| Protein GI | 156975375 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTCGA TTAAAAACGC AGAACTTGGT TGGAACGAAG CTGGTACACC GGTTTCTGAC
CAATTTGATG ATGTTTATTT CTCCAACGTA AACGGTCTCG AAGAGACGCG TTACGTGTTC
CTCAAACAAA ATCATCTACC AGAAAGATGG CAGGAATTTG ACCAAAGACG TTTTGTTATT
GGTGAAACCG GATTTGGCAC AGGGTTGAAC TTCTTAGCCG TGTGGCAATG GTTTACCGAA
TTTCGTCGCG AATATCCAGA GGCAACGCTA AAAGAATTGC ATTTCGTTAG TTTTGAGAAG
TACCCACTTA GCAAAGCTGA TTTAGAAAAA GCACATCAAT CTTGGCCAGA ATTGGCAGAG
TTTGCCGAAA AGCTGCAACA GCACTACCCA GCCGCTGTGC CTGAGTGTCA TCGCATTGTT
TTAGAAGACG GCGCTATCAC GCTCGATCTA TGGTTTGGCG ATATCAAAGA CTGCATGCCG
CTTGTTCCTT ATGCTGAGCA AGGCTTGATT GATGCTTGGT TCTTAGACGG GTTTGCTCCA
AGCAAAAACC CAGAGATGTG GAACCAAAAC CTGTTTAATG GCATGGCAAA ATTGGCGAAG
CAGGATTGTA CAGTCGCAAC CTTCACAGCC GCGGGCTTTG TGCGTCGCGG CTTAAACGAA
GCGGGCTTTG CAATGAAGAA AGTCAAAGGC TTCGGCACCA AGCGTGAAAT GATTGCGGGT
TCGATGGAGC AACGTGAAGC GCATTCAAAC CACCTACCTT GGTTCAACCG CACAGCGTCT
ACCAATCATG ATTCCATAGC GATTATTGGT GGCGGCATCG CTAGCGCGGC TTTGGCTAAA
ACGCTGGTTC GCCGCGGTCA GAATGTCACG CTTTACTGCA AAGACGCTCA ACCCGCAGAA
GGCGCGTCGG GCAATCGACA AGGTGCTGTA TACCCATTGT TAAATGGTCC ACACAAAGGC
GTTTCACGCG TGTTCGCTCC GGGCTTTTTG TTTGCCCGTC AGTTTGTTGA CCAAGCAGCG
CAAGATATCC AATTTGATCA CGATTGGTGC GGCATCACTC AGTTAATGTG GGATGACAAA
TCCGCAGATA AATTAGAGAA AATGCTTGCT GGTAATTTCA CACCGGAGTT AATTCACAAA
CTATCTTCTG AAGAGACGGC GGAAAAAATA GGCTTGCCGA TTGATATGGC ATCGGTTCAC
TACCCTCTTG GTGGCTGGTT ATGCCCCGCT GAACTCACCC GTGGTTTGAT TGCAAAACTA
GAAAACACAG AACTTTTTGA AGCGAAGTTC GAGCATCAGG TCAAGTCACT AGATTGGGAT
GAAGCGCGTA AGCTTTGGAC ATTGAAGGCG AACGGTCAAA GCTTTGAACA TTCAACTGTA
GTGGTTGCTA ATGGCAGTGA GTTCCAAACA CTAAGCCAAA CCGCTGATTT ACCAATGGGT
CAGGTAAAAG GTCAAGTTAG CCATGCTCCT GCAACTGAAA CGCTGTCTAA GCTGAAAACA
GTATTGTGTT ACGACGGTTA CATGACACCT GTTAACCCGA ATAATCAGCA CCTATGTATC
GGTGCAAGCT ACGACCGCAG CCACCTCGAT TACGAGTTTG ACGAGGATGC GCAAAAAGAC
AACGCTGAGA AATTGGTGAA GTGCCTGCCG AACCAAACTT GGACGAAAGA GGTGGATACC
TCTGGTAACT TGTCGCGCCA AGGTATTCGC TGTGTTAGCC GTGACCACCT GCCGTTTGTC
GGTAACGTAG GCGACTTTGA AACCATCAAA ACGCAATATG CGGATCTGCA GAATCAACAA
GAACAAGACG TTGAAGCGAT TCACCAGTTC CCTAACCTAT TCTGTTTCTT AGGTTTAGGT
TCTCGTGGTT TGAGTTCTGC GCCTCTAATG GCCGAGGTGT TGGCATCACA AATCTGTGGC
GACCCGTTAC CACTGCCTGT TGATGTGCTG ACTGAGCTGC ACCCAAGCCG TATGTGGGTA
AGAAAGCTAC GTAAAGGTAA GGCGATTACT GAACTGTAA
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| Protein sequence | MTSIKNAELG WNEAGTPVSD QFDDVYFSNV NGLEETRYVF LKQNHLPERW QEFDQRRFVI
GETGFGTGLN FLAVWQWFTE FRREYPEATL KELHFVSFEK YPLSKADLEK AHQSWPELAE
FAEKLQQHYP AAVPECHRIV LEDGAITLDL WFGDIKDCMP LVPYAEQGLI DAWFLDGFAP
SKNPEMWNQN LFNGMAKLAK QDCTVATFTA AGFVRRGLNE AGFAMKKVKG FGTKREMIAG
SMEQREAHSN HLPWFNRTAS TNHDSIAIIG GGIASAALAK TLVRRGQNVT LYCKDAQPAE
GASGNRQGAV YPLLNGPHKG VSRVFAPGFL FARQFVDQAA QDIQFDHDWC GITQLMWDDK
SADKLEKMLA GNFTPELIHK LSSEETAEKI GLPIDMASVH YPLGGWLCPA ELTRGLIAKL
ENTELFEAKF EHQVKSLDWD EARKLWTLKA NGQSFEHSTV VVANGSEFQT LSQTADLPMG
QVKGQVSHAP ATETLSKLKT VLCYDGYMTP VNPNNQHLCI GASYDRSHLD YEFDEDAQKD
NAEKLVKCLP NQTWTKEVDT SGNLSRQGIR CVSRDHLPFV GNVGDFETIK TQYADLQNQQ
EQDVEAIHQF PNLFCFLGLG SRGLSSAPLM AEVLASQICG DPLPLPVDVL TELHPSRMWV
RKLRKGKAIT EL
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