Gene VIBHAR_03056 details

Gene Information

• Locus tag: VIBHAR_03056
• ID: 5555839
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 3078843
• End bp: 3080741
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640908538
• Product: hypothetical protein
• Protein accession: YP_001446233
• Protein GI: 156975326
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAAACG CATTTTCTCT TATAGATAAA CCCACTTTTT TTGGCGCAAT TGCGCTTCTC 
CTTTCGATTG TTTTCCCTCT AATTTTGTTT CCAACAGAAG GTGCAGAATG GATTGCGGTT 
GCTAAGACCT TTATGACCGA CAAGCTCGGT TTCCTCTACC TTGCACTTGG CCTTGCTGCC 
TTTATCTTCA TGATTTACGT TGTGTTCAGC GACATGGGGC AAATCAAGCT AGGTGATCCA 
GACGAAAAAC CAGAATTTAC TACCGCATCA TGGGCGGCCA TGCTTTTCTG TGGGGGTATA 
GGTGCCAGCA TCCTTTATTG GGGCTGTATC GAATGGGCTT ACTACTACCA ATCACCTCCT 
TTCCAGCTTG AACCTGGCAG CGAAGAGGCG GTCCGTTGGG CTGCAACCTA CGGTCTTTTC 
CACTGGGGAC CAATTGCTTG GTCTATATAC CTGATTCCTG CCCTACCGAT TGCGTACTTC 
TTCTACGTAC GTAAACAGCC TGTACTGAAA GTATCCAGTG CCTTGATGCC CATCCTTGGT 
GAAGAGCGCA GTAAAGGTTC AGTAGGTAAA ATTGTTGATG TACTATTTAT CTTTGGTCTA 
CTTGGCGGCG CGGCGACCAG CTTGGGCTTG GCAGCACCTC TGATTGGTGA AGGCCTACAT 
TACTTGTTTG GCATGCCAAA GAACACCTAC AGCCAAGTAC TGGTACTGCT TATCTGTACG 
GCGATTTTTG CTTACTCCTC TTACGCGGGT ATGGAAAAAG GCATTAAAGT TCTCAGTAAC 
ATTAACTTCT GGGGTGCAAT GGGACTGCTT GCCTTTGTAC TTGCCGTTGG CCCAACCATC 
TTCATGCTTG AAACGGGCTT AGACTCGATT GGTCGTATGC TGTCGAACTT CTTTGTGATG 
GCAACATGGG CGGAACCATT CGGCGGATAC GGTACATTCG ACAACACCCA CTTCCCACAG 
GATTGGACGA TTTTCTACTG GGCATGGTGG CTCGTGTTCG CGCCAAGTAT GGGTCTATTT 
GTAGCGCGTA TCTCTCGCGG TCGCACGATC AAACAAATGG TCTCTGGCTC CATCTTCTTC 
GGCTCTCTAG GTTGTTTCCT ATTCTTCATG ATTCTGGGCA ACTATGGCTT GTCTCTACAG 
CTATCAGGGG AGTTGGACGT CGTTGGCATC TTGAATGCAG AAGGGGCAAC CGCTGCCATC 
TTCTCAATGC TTGATGCACT GCCAATGAGC TACTTGGTCA TCGCGGTCTT TACATTGCTG 
TGTATTATCT TTACCGCAAC CACGTTCGAC TCAATCTCTT ACATTCTTGC GTCTGTGGTA 
CAAAATAACG TGACCGAAGA ACCGATGCGC TGGAACCGCA TGTTCTGGGC ATTTACGCTG 
TCTTTCCTAC CGACAGTACT CATGTTCATG GGCGGCCTAA GCACCTTACA AACCGCAGCG 
ATCGTTGGGG GTTTGCCATT GCTTGGTATT TCCATCATGT TGATGGTGTC AGCCGTTCGT 
GCCACAACGT TGGACATTCG TCATCAAGAA GATTATGTAG AGCCAACCAT CAACATCGAA 
GAACTGCCAG AGTTCGATCC TTGGTCAACC GAAGGGATGG CGATGGCAAG GTTTGAGCGT 
GCGCGTGATG CAGCCCAAGA AGCAGCAGAA GATGAACGTG ACGCACTGGC TGAGTTGATG 
AAGCTTCGTA AACGTATTCG CGCTTTTGCT CTTGAGCACA GCGACGACAA CGATTTTGCA 
GACCATCACT TACCTCAGGA GATGCAAGAG GAGTTGCAAA ACCTACTGGA TAACGTGGTA 
AAAGCAAAAG AAAGAAAACT CGAGTTATCC GAAACTGCTC AGCAGTCTAG AGCCGAGTTT 
AATCAAATCG TGGCCCAAAG TACTGCGTAC GCGGTGTAA 

 

Protein sequence

MKNAFSLIDK PTFFGAIALL LSIVFPLILF PTEGAEWIAV AKTFMTDKLG FLYLALGLAA 
FIFMIYVVFS DMGQIKLGDP DEKPEFTTAS WAAMLFCGGI GASILYWGCI EWAYYYQSPP 
FQLEPGSEEA VRWAATYGLF HWGPIAWSIY LIPALPIAYF FYVRKQPVLK VSSALMPILG 
EERSKGSVGK IVDVLFIFGL LGGAATSLGL AAPLIGEGLH YLFGMPKNTY SQVLVLLICT 
AIFAYSSYAG MEKGIKVLSN INFWGAMGLL AFVLAVGPTI FMLETGLDSI GRMLSNFFVM 
ATWAEPFGGY GTFDNTHFPQ DWTIFYWAWW LVFAPSMGLF VARISRGRTI KQMVSGSIFF 
GSLGCFLFFM ILGNYGLSLQ LSGELDVVGI LNAEGATAAI FSMLDALPMS YLVIAVFTLL 
CIIFTATTFD SISYILASVV QNNVTEEPMR WNRMFWAFTL SFLPTVLMFM GGLSTLQTAA 
IVGGLPLLGI SIMLMVSAVR ATTLDIRHQE DYVEPTINIE ELPEFDPWST EGMAMARFER 
ARDAAQEAAE DERDALAELM KLRKRIRAFA LEHSDDNDFA DHHLPQEMQE ELQNLLDNVV 
KAKERKLELS ETAQQSRAEF NQIVAQSTAY AV