| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_02961 |
|---|
| Symbol | |
|---|
| ID | 5554773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 2983815 |
|---|
| End bp | 2985845 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640908443 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001446140 |
|---|
| Protein GI | 156975233 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG TTTATGAACT GGTCTCTGAA TATCAACCAT CCGGTGATCA GCCAACCGCC
ATCAAACAGT TATTAGAGGG TTTAGACGCA GGCCTTGCCC ATCAGACTCT GTTGGGTGTA
ACCGGCTCGG GTAAAACATT CACACTGGCA AACGTAATTG CAGAAGCGCA GCGTCCGGCG
ATTCTTCTCG CGCCAAACAA AACACTTGCC GCGCAACTGT ACGGTGAGAT GAAAGCCTTC
TTCCCAAATA ATGCCGTTGA ATACTTCGTT TCTTACTACG ATTACTATCA ACCCGAAGCT
TACGTGCCAA CGACGGATAC CTTTATCGAA AAAGACGCGT CGGTGAATGC TCACATAGAG
CAGATGCGTT TATCGGCAAC AAAAGCATTA TTGGAACGCA AAGATGCAAT CATTGTTGCG
TCGGTTTCGG CCATTTATGG TTTGGGTGAC CCAGAGTCGT ACCTACAAAT GATGCTTCAC
TTGCGCCGCG GTGATGTGAT TGACCAGCGC GACATGCTGC GTCGTCTTGC AGAACTTCAA
TATTCACGTA ACGATGTTGC GTTTGAGCGT GGCCAGTTCC GTGTGCGTGG TGAAGTGATT
GACATCTTCC CGGCGGAATC AGACCAAGAC GCCGTGCGCG TAGAGATGTT TGACGATGAA
GTCGACTGTA TCAGCGTATT TGACCCATTG ACTGGTGTGG TCAAACAGCG CGACCTGCCG
CGTTATACGA TTTACCCAAA GACGCACTAT GTCACGCCAC GTGAGCGTAT TCTTGATGCC
ATTGAAAGCA TTAAAGACGA GCTTGAAGTG CGTAAGAAGC AGCTGTTAGA CAACAACAAA
CTCCTAGAAG AGCAACGTAT CAGCCAGCGC ACTCAATTTG ACATTGAGAT GATGAACGAG
CTGGGTTTCT GTTCCGGTAT CGAAAACTAC TCTCGTTACT TAAGTGGACG AGCGGAGGGG
GAGCCGCCAC CAACGCTATT TGACTACTTA CCTCACGATG GCTTGCTGAT CATCGACGAA
TCACACGTTA CCGTACCGCA AATTGGCGCG ATGTATAAAG GTGACCGCTC ACGTAAAGAG
ACGCTGGTGG AGTTTGGTTT CCGTTTGCCT TCTGCATTGG ATAACCGCCC AATGAAGTTC
GAAGAGTTCG AGGCGATTTC TCCACAGACA ATATTTGTTT CTGCAACGCC GGGTAACTAC
GAACTTGAGA AGTCAGCCGA TGAGATTGCG GACCAGGTTG TGCGTCCAAC GGGTCTGCTC
GATCCGGAAT TAGAAGTTCG CCCAGTTGCT ACTCAGGTTG ATGATCTGTT GTCTGAGATT
CGAATTCGCG CAGCGCAAGA CGAGCGTGTT CTTGTGACGA CGCTAACCAA GCGTATGGCA
GAAGACTTAA CCGAATACCT GCACGAGCAC GATGTGAAAG TTCGTTACCT TCACTCAGAC
ATTGACACGG TTGAGCGTGT AGAAATCATT CGCGACCTTC GTTTGGGTGA ATTTGATGTG
TTGGTTGGGA TCAACTTATT GCGAGAAGGT CTCGATATGC CGGAGGTGTC GCTGGTGGCA
ATCTTGGATG CAGATAAAGA AGGTTTCTTG CGTTCAGAGC GTTCATTGAT TCAGACCATT
GGTCGTGCGG CTCGTAACAT CAAAGGTAAA GCGATTCTTT ACGCAGATTC GATCACTAAG
TCGATGAAGA AAGCGATGGA CGAAACTGAT CGTCGTCGAG AGAAGCAAAA AGCGTATAAC
GCAGAGATGG GTATTGAGCC TCAAGCCTTG AAGCGCAATA TTAAAGACAT CATGGAGTTG
GGGGATATCA CCAAATCGAA GCGTCAGCGT AATACTAAGC AAGTGCCGCT ATCGAAAGTG
GCAGAGCCTT CTCAGACTTA CGAGATCATG TCTCCACAAC AGCTGGAGAA GGAGATCAGT
CGTTTGGAAG CGGCGATGTA CCAACACGCT CAAGATCTTG AATTTGAATT GGCGGCCCAG
AAACGTGACG AGATTGAAAA GCTGCGCGCT CAATTTATCG CGAACAGTTA A
|
|---|
| Protein sequence | MSKVYELVSE YQPSGDQPTA IKQLLEGLDA GLAHQTLLGV TGSGKTFTLA NVIAEAQRPA
ILLAPNKTLA AQLYGEMKAF FPNNAVEYFV SYYDYYQPEA YVPTTDTFIE KDASVNAHIE
QMRLSATKAL LERKDAIIVA SVSAIYGLGD PESYLQMMLH LRRGDVIDQR DMLRRLAELQ
YSRNDVAFER GQFRVRGEVI DIFPAESDQD AVRVEMFDDE VDCISVFDPL TGVVKQRDLP
RYTIYPKTHY VTPRERILDA IESIKDELEV RKKQLLDNNK LLEEQRISQR TQFDIEMMNE
LGFCSGIENY SRYLSGRAEG EPPPTLFDYL PHDGLLIIDE SHVTVPQIGA MYKGDRSRKE
TLVEFGFRLP SALDNRPMKF EEFEAISPQT IFVSATPGNY ELEKSADEIA DQVVRPTGLL
DPELEVRPVA TQVDDLLSEI RIRAAQDERV LVTTLTKRMA EDLTEYLHEH DVKVRYLHSD
IDTVERVEII RDLRLGEFDV LVGINLLREG LDMPEVSLVA ILDADKEGFL RSERSLIQTI
GRAARNIKGK AILYADSITK SMKKAMDETD RRREKQKAYN AEMGIEPQAL KRNIKDIMEL
GDITKSKRQR NTKQVPLSKV AEPSQTYEIM SPQQLEKEIS RLEAAMYQHA QDLEFELAAQ
KRDEIEKLRA QFIANS
|
|---|
| |