Gene VIBHAR_01824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01824 
SymbolmnmA 
ID5556408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp1837707 
End bp1838831 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content45% 
IMG OID640907315 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_001445020 
Protein GI156974113 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATA ACAGCCAAAA GAAAGTCATC GTCGGTATGT CCGGCGGCGT TGATTCATCT 
GTTTCTGCGT ATCTTCTAAA GCAACAAGGC TACCAAGTAG AAGGCCTGTT CATGAAGAAC 
TGGGAAGAAG ATGATAACGA AGAATATTGT ACAGCAGCAG AAGATCTTGC TGATGCTCAG 
GCAGTATGTG ACAAGCTAGA CATTCACCTA CACACCATCA ACTTTGCTGC TGAATACTGG 
GATAACGTAT TTGAGTACTT CCTTGCTGAA TACAAAGCAG GCCGTACACC AAACCCAGAC 
ATTCTTTGTA ACAAAGAAAT CAAGTTCAAA GCATTCCTAG AATTCGCTGA TGAAGTGCTT 
GACGCTGATT ACATTGCAAT GGGTCACTAC GTACGTCGCT CTTTCCCAGA GAACGATGAA 
AAGCCACAGA TGCTACGTGG CCTAGACAGC AACAAAGATC AAAGCTACTT TCTATACACA 
TTAAGCAACG AGCAAATTGC ACGTAGCCTA TTCCCTGTTG GTGATTTAGA GAAGCCAGAA 
GTACGCCGTA TCGCAGAAGA GCAAGATCTG ATCACGGCGA AGAAGAAAGA CTCAACGGGT 
ATTTGTTTCA TCGGTGAGCG TAAGTTTACG GAATTCCTAG GTCGTTACCT TCCAGCTCAA 
CCAGGCAACA TCGAAACGCC TGAAGGTGAA GTGATTGGTC AACACCAAGG CTTGATGTAC 
CACACATTAG GCCAGCGTAA AGGTCTGCAC ATCGGCGGCC GCAAGGGTGG CGGTGGTAAC 
GAAGACCCAT GGTTCGTTGG TGAGAAAGAC CTAGAACGTA ACGTTTTGAT TGCCGTTCAA 
GGTAAAGACC ACCCAATGCT GAAATCAGAA GGTCTACTTG CATCACAACT TCACTGGGTA 
GATCGTGAAC CAATTCGCGA TGTTATGAAG TGCACAGTGA AAACTCGTTA CCGTCAGGAA 
GATATTCCTT GTACAATCAT CCCTATCGAT GATGAAAACA TTAAAGTGAT CTTTGACGAA 
CCACAAATTG CTGTAACACC AGGTCAATCA GCTGTGTTCT ACAAAGATGA CGTGTGCCTA 
GGTGGCAGCA TCATCGAGCA ACGCATTAAA TATTCTCAAG CTTAG
 
Protein sequence
MSDNSQKKVI VGMSGGVDSS VSAYLLKQQG YQVEGLFMKN WEEDDNEEYC TAAEDLADAQ 
AVCDKLDIHL HTINFAAEYW DNVFEYFLAE YKAGRTPNPD ILCNKEIKFK AFLEFADEVL 
DADYIAMGHY VRRSFPENDE KPQMLRGLDS NKDQSYFLYT LSNEQIARSL FPVGDLEKPE 
VRRIAEEQDL ITAKKKDSTG ICFIGERKFT EFLGRYLPAQ PGNIETPEGE VIGQHQGLMY 
HTLGQRKGLH IGGRKGGGGN EDPWFVGEKD LERNVLIAVQ GKDHPMLKSE GLLASQLHWV 
DREPIRDVMK CTVKTRYRQE DIPCTIIPID DENIKVIFDE PQIAVTPGQS AVFYKDDVCL 
GGSIIEQRIK YSQA