| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01380 |
|---|
| Symbol | |
|---|
| ID | 5554986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 1394129 |
|---|
| End bp | 1395277 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640906872 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_001444584 |
|---|
| Protein GI | 156973677 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGCAT TTTTTTATAG CGAGAAGCAT GTGAACTATC AGATCATTAC GAAAAACAAA
GACCTAGAAG AAGTCTGCGC TCTAGCAAGA GAAGCCGACG TAGTTATGCT GGATACCGAA
TTCGTGCGAA TCAGGACTTA CTATCCGCAA CTAGGTTTGA TTCAGCTTTT CGATGGCAAA
CAACTTTCCC TTATCGACCC GACCGAACTG ACTGACATGA CGTCGTTCGT CGAGTTGCTA
AAAGACACAT CTGTACTAAA AGTACTGCAT GCGTGTGGTG AAGATCTAGA AGTCTTCCAA
AATGCCTTTG GCTGCACACC ATTCCCAATG GTGGATACCC AATTGATGGC GGCATTCTTG
GGTCACGGCC TGTCGACAGG CTTTGCAACG CTGGTAGAAG AATATCTTGG CGTGGAGCTA
GACAAGAGCG AATCTCGCAC TGATTGGATG GCGCGTCCAC TGACTCAAAA GCAGCTTGAT
TACGCCGCGG CCGACGTGCA CTACCTAATG CCTCTTTACG AGAAGCTATT AGATAAAGTG
AACGAAGCAG GCTGGTGGGA AGCGGTTCAG CAAGAGAGCG ACTTACTGGT ATCAAAGCGT
ATTCGCAACG TGAACGAAGA AAACGCCTAC CTAGACATCA AAGGCGCATG GCAGCTAAGA
CCGACTGAAC TTGCGATTCT TAAGCCATTG GCAACTTGGC GTTACCGCGA AGCGATTAAG
CGTGACCTAG CGTTGAACTT CATCTTCAAA GAAGGCGACC TGTTGACGGT GGCTCGTCTT
GGTTTGACTG GCTTTAAGAA GATGGAAGCG GAAGGCATCG ACATTCGTGC GATTAACCGC
CACGGTGCAC GAATTGCGGG TATTGTGAAG CAAGCGAAAC AAACACCAGC CGATGACTAC
CCAGCAAAAA TCGAACGTTT GATGGATTAC CCAGGCTACA AGCAAATCTT CAAGAACATG
AAGGATGTGG TGAAGGTAGC GTCGCAAAAA TCAGGCTTGG CAACCGAGTT CTTGGCTTCT
AAAAAGCAGA TCAACCAAAT CATCAGTTGG GTATGGAAGA AAGACCGCGA CCCAGCGCGT
CTGCCGGATG TGATGCAAGG CTGGCGTCTT GAGTTACTCG GCGAGAAGAT GAATAAGGTG
CTGAAGTAA
|
|---|
| Protein sequence | MLAFFYSEKH VNYQIITKNK DLEEVCALAR EADVVMLDTE FVRIRTYYPQ LGLIQLFDGK
QLSLIDPTEL TDMTSFVELL KDTSVLKVLH ACGEDLEVFQ NAFGCTPFPM VDTQLMAAFL
GHGLSTGFAT LVEEYLGVEL DKSESRTDWM ARPLTQKQLD YAAADVHYLM PLYEKLLDKV
NEAGWWEAVQ QESDLLVSKR IRNVNEENAY LDIKGAWQLR PTELAILKPL ATWRYREAIK
RDLALNFIFK EGDLLTVARL GLTGFKKMEA EGIDIRAINR HGARIAGIVK QAKQTPADDY
PAKIERLMDY PGYKQIFKNM KDVVKVASQK SGLATEFLAS KKQINQIISW VWKKDRDPAR
LPDVMQGWRL ELLGEKMNKV LK
|
|---|
| |