| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01256 |
|---|
| Symbol | ushA |
|---|
| ID | 5554694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 1264459 |
|---|
| End bp | 1266120 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640906748 |
|---|
| Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
|---|
| Protein accession | YP_001444462 |
|---|
| Protein GI | 156973555 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC GCCTGATTGT AAAGACCGCT TTGAGCGCGG CTATCTTGGC AACTCTTGCC
GGATGTGCAA CGCAACCAGC ACACGAATGG AATGAAGACA CAACTTACAA ACTGACCGTA
CTGCACACCA ACGACCACCA TGGTCGTTTT TGGCAAAACA AGTACGGTGA GTACGGCATG
GCGGCACGTA AGACGCTGAT TGATGAGCTG CGTGCAGAGA TTCAAGCCGA AGGCGGTAGC
GTGCTTTTAC TATCAGGTGG TGATATCAAC ACAGGTGTGC CTGAGTCTGA CCTGCAAGAT
GCTGAGCCTG ACTTTAAAGG CATGAGCAAG ATTGGTTACG ACGCGATGGC ACTGGGTAAC
CATGAATTCG ATAACCCACT GGAAGTGTTG TTCAAACAGC AAGAGTGGGC AAACTTCCCA
ATGCTGTCTG CCAACATTTA CGACAAAGAA ACAGGCGAGC GTCTGTTCCA ACCTTATGCC
ATGTTCAACA AGCAGGGCAT CAAGATTGCT GTGATTGGCC TCACGACAGA AGACACGGCA
AAACTGGGTA ATCCAGAGTA CATCGGCGAG GTTGATTTCC GCGATCCGAA AGAAGAAGCG
AAAAAGCTGA TTGCTGAACT AAAGCAAACT GAAAAGCCAG ATCTTATCTT TGCAGTGACA
CATATGGGTC ACTATGAAAA CGGCAACCGT GGTGTGAATG CGCCTGGTGA CGTGGCCTTG
GCTCGCTACC TAAATGAAGG TGATTTGGAC ATGATTGTGG GTGGTCACTC ACAAGAGCCA
GTTTGTATGG AAGGCCCTAA CGTCATTAAG AAGAACTTTA AGCCGGGTGA CGAATGTAAG
CCAGATGAGC AAAACGGTAC TTACATTGTG CAAGCGTACG AGTGGGGTAA GTACGTTGGT
CGTGCTGATT ACGAATTCCG CAACGGCGAA CTGTCGATGG TGAGCTACGA TCTGATTCCG
GTTAACTTGA AGAAGAAAAT CAAAGTGAAC GGCGAATCTC AGCGTGTATT GGTTCAAGAT
GAAATTGCAC AAGACTCGGC AATGCTGGAT TTCCTTCGCC CTTACCAAGA AAAAGGTCAG
GGCCAGTTGA ATGTGAAAAT TGCTGAATCT AACGGCAAGC TGGAAGGTGA CCGCAACGTT
GTTCGTTTCC AACAAACCAA CCTTGGTCGT TTGATTGCAA CTGCCCACAT GGAGCGTGCT
AAAGCGGACT TCGCTGTGAT GAACTCGGGC GGTGTGCGTG ATTCGATTGA AGCAGGCGAT
ATCACCTACA AAGACGTGCT GACGGTTCAG CCATTTGGCA ACATGGTGTC TTACATCGAT
ATGTCGGGTA AAGAAGTTCT TGATTACTTA AACGTGGTGG CGACAAAACC CGTTGATTCA
GGTGCTTACG CTCAGTTTGC TGGTATCTCA ATGACGGTAG AAAACGGCAA AGTATCCAAT
GTCTTTATTG GTGGTAAACA GCTTCGCCTA GACGGTCAAT ACCGCTTTAC CGTACCAAGC
TACAACGCGT CAGGTGGTGA TGGTTATCCG AAAGTGAATA CTCATCCGGG TTACGTCAAC
ACGGGATTTA CGGATGCAGA GGTACTGAAA GAGTTCTTGG AATCACACAG TCCAATTGAT
GTAAATGAGT ACGCGCCTTC TGGTGACATC GTTTACAAGT AA
|
|---|
| Protein sequence | MKQRLIVKTA LSAAILATLA GCATQPAHEW NEDTTYKLTV LHTNDHHGRF WQNKYGEYGM
AARKTLIDEL RAEIQAEGGS VLLLSGGDIN TGVPESDLQD AEPDFKGMSK IGYDAMALGN
HEFDNPLEVL FKQQEWANFP MLSANIYDKE TGERLFQPYA MFNKQGIKIA VIGLTTEDTA
KLGNPEYIGE VDFRDPKEEA KKLIAELKQT EKPDLIFAVT HMGHYENGNR GVNAPGDVAL
ARYLNEGDLD MIVGGHSQEP VCMEGPNVIK KNFKPGDECK PDEQNGTYIV QAYEWGKYVG
RADYEFRNGE LSMVSYDLIP VNLKKKIKVN GESQRVLVQD EIAQDSAMLD FLRPYQEKGQ
GQLNVKIAES NGKLEGDRNV VRFQQTNLGR LIATAHMERA KADFAVMNSG GVRDSIEAGD
ITYKDVLTVQ PFGNMVSYID MSGKEVLDYL NVVATKPVDS GAYAQFAGIS MTVENGKVSN
VFIGGKQLRL DGQYRFTVPS YNASGGDGYP KVNTHPGYVN TGFTDAEVLK EFLESHSPID
VNEYAPSGDI VYK
|
|---|
| |