Gene VIBHAR_00956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00956 
SymbolxerD 
ID5555320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand+ 
Start bp961566 
End bp962483 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content48% 
IMG OID640906450 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_001444182 
Protein GI156973275 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGCAC AACAGCCTGT CAATCAACAA GATTTTGGCC TTGTTGAGCA ATTCTTAGAT 
GCGATGTGGA TGGAGCGTGG CCTATCAGAG AACACGTTGG CTTCCTACCG AAATGATTTA 
ATGAAACTGC TCGCGTGGAT GGAGCAACAC AGCTACCGTC TGGATTTCAT CAGTCTGTCT 
GGCTTGCAAG AGTACCAAAG TTATCTTGTA GATTTAGATT ACAAGCAGAC TTCCCGCGCG 
CGTATGCTGT CGGCGATTCG TCGTTTGTTC CAATACATTC ACCGCGAAAA AGTACGCGCG 
GATGATCCGA GTGCTTTGTT GGTCAGCCCA AAGTTGCCGC AGCGCCTACC TAAAGACATC 
AGTGAAGAGC AAGTCGATGC TTTGCTAGAT GCGCCAGATC CGAATGACCC AGTTGAGCTG 
CGTGATAAAG CCATGCTTGA ATTACTTTAT GCGACAGGTC TGCGTGTGAC AGAGCTAGTC 
AGCTTGACAA TGGAAAACGT CAGTTTGCGC CAAGGGTTAG TGCGCGTGAC GGGTAAAGGT 
GGTAAAGAAC GCCTTGTCCC AATGGGAGAG AATGCGGTCG ATTGGATTGA AACTTTTATC 
CAACAAGGTC GGTCTGCTTT ATTGGGGGAG ACTACGTCTG ATGTAGTTTT CCCGAGTAAA 
CGTGCTAGGC AGATGACTCG CCAAACATTT TGGCACCGTA TCAAGTACTA TGCTGTGATA 
GCGGGTATTG ATACTGACCA GTTGTCGCCA CACGTACTTC GCCATGCTTT TGCAACACAC 
TTATTGAACT ATGGCGCAGA TCTCAGGGTC GTACAGATGC TGTTGGGGCA TAGTGACTTA 
TCGACCACGC AAATATATAC TCACGTGGCG ACTGAACGAT TGAAACAGAT CCACAGTCAA 
CACCACCCAA GAGCATAA
 
Protein sequence
MTAQQPVNQQ DFGLVEQFLD AMWMERGLSE NTLASYRNDL MKLLAWMEQH SYRLDFISLS 
GLQEYQSYLV DLDYKQTSRA RMLSAIRRLF QYIHREKVRA DDPSALLVSP KLPQRLPKDI 
SEEQVDALLD APDPNDPVEL RDKAMLELLY ATGLRVTELV SLTMENVSLR QGLVRVTGKG 
GKERLVPMGE NAVDWIETFI QQGRSALLGE TTSDVVFPSK RARQMTRQTF WHRIKYYAVI 
AGIDTDQLSP HVLRHAFATH LLNYGADLRV VQMLLGHSDL STTQIYTHVA TERLKQIHSQ 
HHPRA