Gene VIBHAR_00848 details

Gene Information

• Locus tag: VIBHAR_00848
• ID: 5556318
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: -
• Start bp: 835910
• End bp: 837772
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640906342
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_001444075
• Protein GI: 156973168
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCAAA ATCCGCAGTC ACAGCTAAAG TTACTTGTTA TTAAAGGCAA GGAACAAGGC 
TATCTGACCT ACGCCGAAGT AAATGACCAC CTACCTGCTG AAATCGTAGA TTCAGAACAG 
GTAGAAGACA TCATTCAGAT GATCAACGAC ATGGGTATCA AGGTAGTAGA AACTGCTCCT 
GATGCCGATG ATCTAGCGCT GAACGATGAC ACAAACATTA CCGATGAAGA TGCAGCTGAA 
GCTGCAGCAG CAGCACTTTC TAGCGTAGAA AGTGAAATTG GTCGTACAAC AGACCCAGTG 
CGCATGTACA TGCGTGAAAT GGGTACTGTG GAGCTGCTGA CTCGCGAAGG CGAAATCGAC 
ATCGCAAAAC GTATTGAAGA AGGTATTAAC CAAGTTCAAT CGTCTGTTGC TGAATACCCT 
GGCACTATCC CATACATTCT TGAGCAGTTT GATAAAGTTC AAGCAGAAGA ACTTCGTCTA 
ACAGACCTAA TCTCTGGATT TGTTGACCCT GATGCAGACG ATACAGCTGC ACCAACAGCA 
ACGCACATCG GTTCTGAGCT GACTGAATCT CAGCTAGAAG AAGAAGATGA AGAAGACGTT 
GATGACGACG AAGAAAGCGA TGACGATTCA GATGATTCTG AAGAAGATGT TGGTATCGAC 
CCAGAGCTAG CGCTTGAGAA ATTCAACCAG CTACGCAGCA CATACCAAAA CCTTCAGCTT 
GCAATCAACG AACACGGTTA CGAGAGCCCT AAAGCGACCG TAGCTAACGA GTTGATGCTA 
GACGTATTCA AAGAATTCCG TCTAACGCCA AAACAGTTCG ATCACCTAGT GAATGAACTG 
CGCACAGCAA TGGATCGCGT TCGTACTCAA GAACGTCTGA TCATGAAGTC TGCAGTTGAA 
TACGGCAAAA TGCCGAAGAA ATCATTCATC GCGCTGTTCA CAGGCAACGA ATCAAGCGAA 
GCATGGCTAG ATGAGATCCT AGCATCTGAC AAGCCATACG CTGAAAAGAT CAAACGTAAC 
GAAGAAGAAA TCCGTCGTTC AATCGCTAAA CTAAAAATGA TTGAAGAAGA GACTTCTCTA 
AACGTTCAAA ACATTAAAGA CATCAGCCGT CGCATGTCTA TCGGTGAAGC AAAAGCTCGC 
CGTGCGAAGA AAGAGATGGT TGAAGCGAAC TTACGTCTAG TAATTTCTAT CGCGAAGAAA 
TACACCAACC GTGGTCTACA GTTCTTGGAT CTAATCCAAG AAGGTAACAT CGGTCTGATG 
AAAGCGGTAG ATAAGTTCGA ATACCGTCGT GGTTACAAGT TCTCGACTTA CGCAACGTGG 
TGGATCCGTC AGGCCATCAC TCGTTCAATC GCGGACCAAG CACGTACGAT TCGTATCCCG 
GTACACATGA TCGAAACGAT CAACAAGCTA AACCGTATCT CTCGTCAAAT GCTGCAAGAG 
ATGGGGCGTG AGCCATTACC GGAAGAACTG GCAGAGCGTA TGCAAATGCC AGAAGACAAG 
ATTCGTAAAG TACTGAAAAT CGCTAAAGAG CCAATCTCTA TGGAGACACC AATTGGTGAC 
GACGAAGATT CGCATCTAGG TGATTTCATC GAAGATACTA CGCTAGAACT ACCGCTAGAT 
TCTGCTACGG CAACGAGCCT GAAAATGGCA ACGAAAGACG TACTTGCAGG TCTAACGCCA 
CGTGAAGCAA AAGTACTTCG TATGCGCTTT GGTATCGACA TGAACACTGA CCACACTCTA 
GAAGAAGTTG GTAAGCAGTT CGACGTTACT CGTGAACGTA TCCGTCAGAT CGAAGCGAAA 
GCACTACGTA AACTTCGTCA CCCAAGCCGC TCAGAAACAC TGCGCAGCTT CCTAGACGAG 
TAA 

 

Protein sequence

MDQNPQSQLK LLVIKGKEQG YLTYAEVNDH LPAEIVDSEQ VEDIIQMIND MGIKVVETAP 
DADDLALNDD TNITDEDAAE AAAAALSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID 
IAKRIEEGIN QVQSSVAEYP GTIPYILEQF DKVQAEELRL TDLISGFVDP DADDTAAPTA 
THIGSELTES QLEEEDEEDV DDDEESDDDS DDSEEDVGID PELALEKFNQ LRSTYQNLQL 
AINEHGYESP KATVANELML DVFKEFRLTP KQFDHLVNEL RTAMDRVRTQ ERLIMKSAVE 
YGKMPKKSFI ALFTGNESSE AWLDEILASD KPYAEKIKRN EEEIRRSIAK LKMIEEETSL 
NVQNIKDISR RMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM 
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE 
MGREPLPEEL AERMQMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDTTLELPLD 
SATATSLKMA TKDVLAGLTP REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK 
ALRKLRHPSR SETLRSFLDE