| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00603 |
|---|
| Symbol | |
|---|
| ID | 5554582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 589933 |
|---|
| End bp | 591153 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640906098 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001443832 |
|---|
| Protein GI | 156972925 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCAT TTGAATACAA AGCGCTAGAC GCGAAAGGCA AACAGAAGAA AGGCACCATT
GAAGGGGATA ACGCTCGTCA GGTGCGCCAA CGCCTAAAAG AACAGGGTAT GATTCCTGTC
GAGGTGATGG AAGCCAAAGC GAAAGCCGCT AAGTCTTCAG GCGGGTCAGT TGGGTTCAAG
CGAGGCATCA AAACCGCAGA GCTTGCGTTG ATTACGCGTC AGCTTTCGAC CTTGGTTCAA
TCGGGGATGC CACTTGAAGA ATGTTTGAAG GCCGTTTCGG AGCAAGCAGA AAAGCCACGT
ATTCGTTCGA TGATTGCCGC GGTGCGCTCA AAAGTCACTG AGGGTTACCC TCTGGCCGAC
AGTTTGGGTG ACTACCCACA TGTTTTCGAT GAGCTTTACC TTTCGATGGT GGCAGCGGGT
GAAAAATCGG GTCACTTGGA TACAGTACTA GAACGCTTGG CTGATTATGT AGAAAACCGC
CAAAAGATGC GTTCTAAGTT GCTGCAAGCC ATGATTTACC CAGTGGTATT GGTGGTGTTT
GCTGTTGGTA TCGTCTCTCT GTTGCTGTCT TCTGTCGTAC CTAAAATCAT TGAACCCATT
ATTCAAATGG GACAAGAGTT GCCTCAATCA ACGCAATTCT TGCTGTCTGC GAGTGAGTTT
GTCCAAGAAT GGGGGCTTAT CATCTTTGTC GTGGTGGTGG TGTTCTTCTA TGGCCTTAAA
CTCGCGTTAC AGAAACCAAA TTTTCGCTTG GCTTGGGATC AAAAAATTCT CAGCCTACCG
TTGATTGGTA AGATTTCTCG CGGTCTGAAT ACCTCACGAT TTGCTCGCAC CTTGTCGATT
TGTACCTCAA GTGCGATTCC TATTCTTGAA GGGATGCGAG TCGCGGTCGA CGTTATGTCG
AACCGTTATG TAAAACAACA GGTCTTAGTT GCGGCAGACA ACGTGCGAGA AGGTGCAAGT
CTGCGCAAAG CCCTTGATCA AACTCGCTTG TTCCCACCAA TGATGCTACA CATGATTTCA
AGTGGTGAGC AAAGTGGTGA GCTTGAAAGT ATGTTGACGC GAGCGGCGGA CAACCAAGAC
CAAAACTTTG AATCGACGGT CAACATTGCA CTTGGCATTT TTACTCCAGT ATTGATTGCC
CTGATGGCGG GCTTGGTACT TTTCATCGTA ATGGCGACAT TGATGCCAAT GTTGGAAATG
AATAACTTGA TGAGCGGATA A
|
|---|
| Protein sequence | MAAFEYKALD AKGKQKKGTI EGDNARQVRQ RLKEQGMIPV EVMEAKAKAA KSSGGSVGFK
RGIKTAELAL ITRQLSTLVQ SGMPLEECLK AVSEQAEKPR IRSMIAAVRS KVTEGYPLAD
SLGDYPHVFD ELYLSMVAAG EKSGHLDTVL ERLADYVENR QKMRSKLLQA MIYPVVLVVF
AVGIVSLLLS SVVPKIIEPI IQMGQELPQS TQFLLSASEF VQEWGLIIFV VVVVFFYGLK
LALQKPNFRL AWDQKILSLP LIGKISRGLN TSRFARTLSI CTSSAIPILE GMRVAVDVMS
NRYVKQQVLV AADNVREGAS LRKALDQTRL FPPMMLHMIS SGEQSGELES MLTRAADNQD
QNFESTVNIA LGIFTPVLIA LMAGLVLFIV MATLMPMLEM NNLMSG
|
|---|
| |