| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00436 |
|---|
| Symbol | |
|---|
| ID | 5553642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 418502 |
|---|
| End bp | 420124 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640905931 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_001443678 |
|---|
| Protein GI | 156972771 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTC AACGTAATAT CCTGCTCATT GCTCTGGCAC TGGTTTCTTT CTTGCTGTTC
CAACAGTGGC AAGTCGCAAA GAACCCAGCA CCTCAAGCAG TTGAACAGGC TCAATCAAGC
AGTACTCTAC CTGCACCATC TTTTGCTGAC GAGCTAGACC CAGTTCCTGG TCAACAGCAA
GCTTCTGCAA AAACTATCAC AGTAACGACT GATGTTTTAA CTCTGTCGAT CGACACCGTT
GGTGGCGATG TGGTACATGC CGACCTAAAC AAATACTCTG CTGAACTTGA TTCATCAGAC
CCATTCGTTC TGCTAAAAGA CACTAAAGGT CACCAGTTCA TCGCGCAAAG CGGTCTAGTG
GGCCCTCAAG GTATCGACCT AAGCAGCACT AACCGTCCTC ACTACAAAGT GAGCGCAGAC
AGCTTTACTC TAGCTGACGG TCAAGACGAA CTACGCGTTC CAATGACATT CACTGCGAAC
GGTATCGAAT ACATCAAGAC TTACGTATTC AAACGTGGCA GCTACGCGCT AAACGTAGAA
TACGATGTCG TGAACAACTC TGGTAACAAC GCGACATTTG GTATGTACGC TCACTTGCGT
CAAAACCTAA TGGACGCTGG TGGTAGCATC ACAATGCCTA CTTACCGCGG CGGTGCTTAC
TCAACAGAAG ACGTTCGCTA CAAGAAATAC AGCTTTGAAG ATATGCAGGA TCGTAACCTG
TCTATCAACC TAGCAGATGG CCAAGGTTGG GCGGCAATGA TCCAACACTA CTTCGCTGCA
GCTTGGATCC CACGCAACGA ACCAGGTACT AACCTGTACA CTCGCGTAAT TGGTAACCTA
GGTGATATCG GCGTACGTAT GCCAAACAAA ACTATCGCAA CGGGCGACCA AGCGAAGTTT
GAAGCAACAC TATGGGTTGG TCCTAAGCTA CAAAACGAAA TGGCAGCAGT AGCAGAAAAT
CTAGACCTAG TAGTGGACTA CGGCTGGCTA TGGTTCATCG CTAAACCACT TCACTCACTG
CTTGCTTTCA TCCAAAGCTT CGTGGGTAAC TGGGGTGTGG CTATCATCTG CTTGACCTTC
ATCGTTCGTG GTGCAATGTA CCCACTAACG AAAGCGCAAT ACACGTCTAT GGCGAAAATG
CGTATGCTAC AGCCTAAGCT GCAAGCAATG CGTGAGCGCA TCGGTGATGA CCGTCAGCGC
ATGAGCCAAG AGATGATGGA ACTGTACAAG AAAGAGAAAG TGAACCCACT GGGTGGCTGT
CTACCTCTTA TCCTACAGAT GCCTATCTTC ATCGCACTAT ACTGGGCACT AATGGAGTCG
GTTGAGCTAC GTCACTCTCC ATTCTTCGGT TGGATTCATG ACCTTTCAGC GCAGGACCCT
TACTACATCC TGCCTCTACT GATGGGTGCG TCAATGTTCC TAATCCAGAA GATGAGCCCA
ACAACAGTAA CGGATCCAAT GCAGCAGAAG ATCATGACCT TTATGCCGGT TATGTTTACC
TTCTTCTTCT TGTTCTTCCC ATCAGGCCTA GTTCTATACT GGTTGGTGTC GAACATCGTT
ACGCTTATCC AGCAAACTTT GATTTACAAA GCACTGGAGA AAAAAGGCTT ACACACTAAG
TAA
|
|---|
| Protein sequence | MDSQRNILLI ALALVSFLLF QQWQVAKNPA PQAVEQAQSS STLPAPSFAD ELDPVPGQQQ
ASAKTITVTT DVLTLSIDTV GGDVVHADLN KYSAELDSSD PFVLLKDTKG HQFIAQSGLV
GPQGIDLSST NRPHYKVSAD SFTLADGQDE LRVPMTFTAN GIEYIKTYVF KRGSYALNVE
YDVVNNSGNN ATFGMYAHLR QNLMDAGGSI TMPTYRGGAY STEDVRYKKY SFEDMQDRNL
SINLADGQGW AAMIQHYFAA AWIPRNEPGT NLYTRVIGNL GDIGVRMPNK TIATGDQAKF
EATLWVGPKL QNEMAAVAEN LDLVVDYGWL WFIAKPLHSL LAFIQSFVGN WGVAIICLTF
IVRGAMYPLT KAQYTSMAKM RMLQPKLQAM RERIGDDRQR MSQEMMELYK KEKVNPLGGC
LPLILQMPIF IALYWALMES VELRHSPFFG WIHDLSAQDP YYILPLLMGA SMFLIQKMSP
TTVTDPMQQK IMTFMPVMFT FFFLFFPSGL VLYWLVSNIV TLIQQTLIYK ALEKKGLHTK
|
|---|
| |