| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00225 |
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| Symbol | rpoB |
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| ID | 5554585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 226317 |
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| End bp | 230345 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640905721 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001443492 |
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| Protein GI | 156972585 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CTTATACCGA GAAAAAGCGC ATCCGTAAGG ACTTTGGTAC TCGTCCACAA
GTTTTGGACA TTCCATACCT GCTATCGATC CAGCTCGATT CGTTCGACAA ATTCATCGAA
CAGGATCCTG AAGGTCAATA CGGTCTTGAA GCTGCTTTCC GTTCTGTATT CCCAATTCAG
AGCTACAACG GCAATTCTGA GCTGCAATAC GTTAGCTACC GTCTTGGTGA GCCAGTTTTT
GACGTTAAAG AATGTCAAAT CCGCGGTGTA ACTTACTCAA AGCCACTACG CGTAAAACTA
CGTCTAGTAA TCTTTGATAA AGACGCGCCA GCAGGTACTG TAAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGCGAAAT TCCGCTTATG ACAGACAATG GTACCTTCGT AATTAACGGT
ACCGAGAGGG TTATCGTATC CCAGCTGCAC CGAAGCCCAG GCGTGTTCTT CGACAGCGAT
AAGGGTAAGA CCCACTCTTC AGGTAAAGTT CTATATAACG CACGTGTAAT TCCTTACCGT
GGCTCATGGC TAGACTTTGA GTTCGATCCT AAGGATAACC TATACGTACG TATCGACCGT
CGTCGTAAGC TACCAGCTTC GATCATCCTT CGTGCACTTG GCAAGACGTC AGAAGAAATT
CTAGATATCT TCTTCGAGAA AGTGAACTTC GAAGTGAAAG ACCAAACTCT ACTAATGGAG
TTGGTTCCTG ATCGTCTACG TGGTGAAACT GCGTCATTCG ACATCGAAGC GAACGGTAAA
ACTTACGTTG AGCAAGGTCG CCGCGTTACA GCTCGTCATA TCCGCCAACT AGAAAAAGAT
GGCGTTGATC ACATCGAAGT ACCAGTTGAG TACATCGTTG GTAAAGTTGC ATCGAAAGAT
TACATCAACG AAGCAACAGG CGAGATCATT GTTAACGCTA ACCAGGAAAT TAGCCTGGAA
GCACTAGCGA ACCTATCTCA GGCTGGCCAC AAATCACTAG AAACGTTGTT CACCAACGAT
CTAGACCATG GTCCATTCAT GTCAGAAACA CTACGTATCG ACAGCACTGT TGATCGTATT
TCTGCATTGG TAGAAATCTA CCGCATGATG CGCCCTGGCG AGCCACCAAC AAAAGAAGCT
GCAGAAGCAC TATTCGAAAG CCTATTCTTC TCTGAAGAGC GTTACGATCT ATCGACTGTT
GGTCGTATGA AGTTCAACAG CTCTATCGGC CGTGAAGATG CTCAAGAGCA AGGCACACTT
GACGAGCTAG ACATCGTTGA AGTGATGAAG AAGCTTATCG CGATCCGTAA CGGTAAAGGC
GAAGTGGACG ATATCGACCA CCTTGGCAAC CGTCGTATCC GTTCTGTAGG CGAAATGGCT
GAGAACCAGT TCCGTGTAGG TCTAGTACGT GTTGAGCGTG CAGTTAAAGA GCGTCTAAGC
CTAGGCGATC TTGACGCAAT CATGCCTCAA GACCTGATCA ACGCGAAACC AATCTCTGCA
GCTGTTAAAG AATTCTTTGG TTCTTCACAG CTTTCACAGT TCATGGACCA AAACAACCCG
CTATCAGAAG TAACGCACAA GCGTCGTATT TCTGCATTGG GTCCTGGCGG TCTAACTCGT
GAACGTGCTG GCTTCGAAGT ACGTGACGTA CACGTAACTC ACTACGGTCG TCTATGTCCT
ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CTCTATCTGC GTTTGCGCGT
TGTAACGAGT ACGGTTTCCT AGAGACACCA TACCGTCGCG TTGTAGATGG TGTTGTAACA
GACGAAGTAG ATTACCTATC TGCAATCGAA GAAGGCCAAT TCGTTATCGC ACAGGCTAAC
GCTGCGCTAA CTGAAGAAGG CGGTTTTGCA GATGAGCTGA TCACAGCTCG TCAAAAAGGT
GAATCTGGCC TGCACCCTCG TGAGCACGCT CAGTACATGG ACGTTGCGAC AAACCAGGTT
GTATCTATCG CTGCATCGCT TATCCCGTTC CTAGAACACG ATGATGCGAA CCGTGCATTG
ATGGGTGCGA ACATGCAACG TCAGGCAGTT CCAACACTTA AGGCTGACAA GCCTCTAGTT
GGTACTGGTA TTGAACGTAA CGTAGCAGTT GACTCAGGTG TAACTGCAGT TGCTAAACGT
GGTGGTGTAA TCCAGTCAGT AGATGCTTCT CGTATCGTTG TTAAAGTGAA CGAAGAAGAG
CTAGTACCAG GTGAAGCTGG TATCGACATC TACAACCTGA CTAAATACAC ACGTTCTAAC
CAGAACACAT GTATTAACCA GCGCCCATGT GTGATGCCAG GTGAACCTGT ATCACGCGGT
GACGTTCTTG CTGATGGTCC TTCAACAGAC CTTGGTGAAC TAGCGCTTGG TCAAAACATG
CGTATCGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ACTCGATCCT AGTATCTGAG
CGCGTAGTTC AAGAAGACCG CTTCACGACT ATACACATCC AAGAACTTAC TTGTGTGGCG
CGTGATACTA AGCTTGGTTC TGAAGAGATC ACAGCGGATA TTCCAAACGT AGGTGAATCT
GCTCTGTCTA AACTAGACGA GTCAGGTATC GTTTACATCG GTGCTGAAGT TAAGGGGGGT
GACATCCTAG TTGGTAAAGT AACACCTAAA GGTGAAACTC AGCTAACGCC TGAAGAGAAG
CTACTACGTG CAATCTTCGG TGAAAAAGCA TCTGACGTTA AAGATACTTC ACTACGTGTA
CCTAACTCTG TTTCAGGTAC GATTATCGAC GTTCAAGTCT TCACTCGCGA TGGCGTAGAG
AAAGACAAGC GTGCGCTTGA AATCGAGCAA ATGCAGCTTA AAGAAGCGAA GAAAGACCTA
ACTGAAGAAT TCCAGATTCT TGAGGGTGGC CTTCTAAACC GTGTTCGCGC TGTATTGATC
GATGGCGGTT ACTCTGAAGC GAAACTAGAC ACAACTGATC GTAAGAAGTG GCTAGAACTG
ACGCTAGAAG ATGACGCTCT ACAAACTCAG CTTGAGCAAC TTGCTGAGCA GTGGGACGAG
CTAAAAGCTG ACTTCGATAA GAAATTCGAA ACTAAGCGTC GTAAGATCAC ACAAGGTGAT
GATCTAGCTC CTGGCGTACT GAAGATCGTT AAGGTTTACC TAGCGGTTAA ACGTCGCATC
CAGCCTGGTG ATAAGATGGC GGGTCGTCAC GGTAACAAGG GTGTAATCTC TAAGATCAAC
CCTGTTGAAG ACATGCCATA CGATGAAAAA GGCCAGCCTG TAGACATCGT ACTTAACCCA
CTGGGTGTAC CTTCGCGTAT GAACATCGGT CAGATCCTAG AAGTACACTT AGGTCTGGCA
GCGAAAGGTA TCGGTGACAA GATCAACCAG ATGGTTAAAG AGCAGCAAGA ACTAGCGAAA
TTCCGCGAGT TCCTACAGAA AGTTTACGAT CTAGGCGAAA CTCGCCAGAA AGTAGACATT
GCTTCTCTAT CTGATGACGA AGTTCGTACT CTGATTAAGA ACCTACGTGG CGGTCTACCA
ATCGCGACTC CAGTATTTGA CGGTGCACCA GAAGCGTCTA TTAAAGCGCT ACTGAAACTA
GCAGACCTAC CAGAATCTGG CCAGCTAAAA CTGTTTGATG GTCGCACAGG TGACCAGTTT
GAGCGTCCTG TAACTGTAGG TTACATGTAC ATGCTGAAAC TGAACCACCT TGTTGATGAC
AAGATGCACG CTCGTTCAAC TGGTTCGTAC AGCCTAGTAA CTCAGCAGCC ACTTGGTGGT
AAAGCTCAGT TCGGTGGTCA GCGTTTCGGT GAGATGGAAG TATGGGCACT AGAAGCATAC
GGTGCTGCTT ACACTCTACA AGAAATGCTA ACGGTTAAGT CGGATGACGT TAACGGCCGT
ACTAAGATGT ACAAAAACAT CGTAGACGGT AACCACAGCA TGGAACCTGG TATGCCAGAA
TCGTTCAACG TATTGTTGAA AGAGATTCGC TCGCTAGGTA TCAACATCGA GCTAGAAGAC
GAAGAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGTRPQ VLDIPYLLSI QLDSFDKFIE QDPEGQYGLE AAFRSVFPIQ
SYNGNSELQY VSYRLGEPVF DVKECQIRGV TYSKPLRVKL RLVIFDKDAP AGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLYVRIDR RRKLPASIIL RALGKTSEEI LDIFFEKVNF EVKDQTLLME
LVPDRLRGET ASFDIEANGK TYVEQGRRVT ARHIRQLEKD GVDHIEVPVE YIVGKVASKD
YINEATGEII VNANQEISLE ALANLSQAGH KSLETLFTND LDHGPFMSET LRIDSTVDRI
SALVEIYRMM RPGEPPTKEA AEALFESLFF SEERYDLSTV GRMKFNSSIG REDAQEQGTL
DELDIVEVMK KLIAIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR
ERAGFEVRDV HVTHYGRLCP IETPEGPNIG LINSLSAFAR CNEYGFLETP YRRVVDGVVT
DEVDYLSAIE EGQFVIAQAN AALTEEGGFA DELITARQKG ESGLHPREHA QYMDVATNQV
VSIAASLIPF LEHDDANRAL MGANMQRQAV PTLKADKPLV GTGIERNVAV DSGVTAVAKR
GGVIQSVDAS RIVVKVNEEE LVPGEAGIDI YNLTKYTRSN QNTCINQRPC VMPGEPVSRG
DVLADGPSTD LGELALGQNM RIAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELTCVA
RDTKLGSEEI TADIPNVGES ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDTSLRV PNSVSGTIID VQVFTRDGVE KDKRALEIEQ MQLKEAKKDL
TEEFQILEGG LLNRVRAVLI DGGYSEAKLD TTDRKKWLEL TLEDDALQTQ LEQLAEQWDE
LKADFDKKFE TKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN
PVEDMPYDEK GQPVDIVLNP LGVPSRMNIG QILEVHLGLA AKGIGDKINQ MVKEQQELAK
FREFLQKVYD LGETRQKVDI ASLSDDEVRT LIKNLRGGLP IATPVFDGAP EASIKALLKL
ADLPESGQLK LFDGRTGDQF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG
KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG NHSMEPGMPE
SFNVLLKEIR SLGINIELED EE
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