| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00033 |
|---|
| Symbol | |
|---|
| ID | 5555869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 29250 |
|---|
| End bp | 30353 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640905529 |
|---|
| Product | fimbrial assembly protein PilM |
|---|
| Protein accession | YP_001443320 |
|---|
| Protein GI | 156972413 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATGCTA ATAACAACCT TTGCACGAAG AAAATTCTCT GGGTGCTAAC AACATCGGCA
CGCAAGAATT TCGGAGCGAG AGTAGAGATG GATAAGCTAT TAGTTACGGG CATAGATATT
GGCCATCACA GCCTCAAAGC CGTGGTACTT AAACCCAATG GCAACAGTTA CGCACTACTG
GGTTACAAAG AAATAATACT TAAGGAAGGT ATTGTCGCTG AAAATAACAC CATAAATCAT
CAAGAAATTG TAAAGACCCT TAAAGAGATG AAAAAAGAGC TACCTTTTCG GGCTCGAAAG
GTCGCAATTT CAGTTCCAGA TAATGCTGTG ATCAGTAAAA AGCTGCAGAT AGAGCAGAAC
TTAGAAGAGA GTGAAAAGGA GTTTGCTGTT GTGCAAGCCT TCTCACATCA ATCTCCATTC
CCTGTGGAAG AGCTGAGTCT TGACTTCATC AAGGTTGATA CGGATGAGCA GATGCGAGGC
ACTGACAGTT ATCAGGTCTT CGCGACTCGT AAAGACGTGG TAGAAACCCG AGTTGAGGCA
TTGCAGAAAT CAGGCTTGAA ACCAGTACTG GTGGACGTGC ACTCACAAAG TCTTGGTCAT
ATGTGGAAAT TGGTTGCGGA ACGTTTTCCT GAAAAGAACA AGTATTGTTT ACTGGACATT
GGTTCTTTGA ACAGTTCTTT CACTATGTTC ACCGAACAAG GTGAATTGTT TCATAAAGAA
TTTCCCTGCG GTACTCGCAC TACGGGCAGT TTGTTTCAAC AAGATCCATT AGCAGACGAC
GCACAAGTGG CAACGGAGCA ATTTAATCGA CAAATCGTTG AGCGTGTTAA ACGTCAGATG
CAGCTCTATA CCTCAATTAA TGGAAGCCAA GATATCAAAG GCGTTTGGCT TTCGGGAGAG
GGCGCTGCAA CACCTATGTT GGCCGAGGAG CTGTCTAGCC AGTTGGCACT AGAGTGTGAA
CTGCTTAATC CACTTGGTTT GTTTGAAATG AAGGTGTCTA AACGCAAACG TCGTGCCGCG
GATTGGCAAC ACTTCACTGC TGCAGCCGGA CTGGCTGTAC GTGGTATTCA GTGGCTAGGA
GGTGACAATG CTGTATCACA TTAA
|
|---|
| Protein sequence | MDANNNLCTK KILWVLTTSA RKNFGARVEM DKLLVTGIDI GHHSLKAVVL KPNGNSYALL
GYKEIILKEG IVAENNTINH QEIVKTLKEM KKELPFRARK VAISVPDNAV ISKKLQIEQN
LEESEKEFAV VQAFSHQSPF PVEELSLDFI KVDTDEQMRG TDSYQVFATR KDVVETRVEA
LQKSGLKPVL VDVHSQSLGH MWKLVAERFP EKNKYCLLDI GSLNSSFTMF TEQGELFHKE
FPCGTRTTGS LFQQDPLADD AQVATEQFNR QIVERVKRQM QLYTSINGSQ DIKGVWLSGE
GAATPMLAEE LSSQLALECE LLNPLGLFEM KVSKRKRRAA DWQHFTAAAG LAVRGIQWLG
GDNAVSH
|
|---|
| |