| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4417 |
|---|
| Symbol | |
|---|
| ID | 5541930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5671757 |
|---|
| End bp | 5672803 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896515 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_001434451 |
|---|
| Protein GI | 156744322 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0674202 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAAAC GAACGCTGGT CGTCTTCTGG TCAATTATGG CGCTAGTACT GGCTGCGTGT
GGACAGCCGA CCCCCGCAGC GCCAACAACC GCCCCTTCAG CCCCCACCAC CGCGCCTTCC
GGCGAACAAC CCACAACAGC GCCCGCCGCG CCCAGCGGGG AAAAACTGCG CTTGATCATC
GGCACCGGCG GCACCGGCGG CGTGTTCTTC CCCTATGGCG GCGGTCTGGC GCGTATTCTT
ACCGAAAAGA TGCCCAACAC GGAAGCGACG GCGCAGGAAA CCGGCGGCTC CGTCGATAAT
ATGAAACTGC TCCAGAATTC GGAAGCGCAA ATCGGCTTCA CCACCGCAGA TTCGGCATAC
GATGGCATTA ATGGCGTGGC AGCATACCAG GCGACCGGTC CGGTTCCCGC CGCAACCATT
GCCGTGCTCT ATCAGAGTTT CATCCATGTG GTCGCGCGCG CCGATTCGGG TATCACAAGC
GTCGCCGATA TGAAAGGGCG ACCTGTCTCG ATTGGATCGG CGGGCAGCAG CACGGAAACC
GCGGCTATCC GCCTGCTCGA AGCCGCAGGG CTGAAGCCGG AAGATGTGGT CCGCGAAAAC
CTGGGGGTGG CCGACTCGGT GGCTGCCATG AAGGATAAGA AGATCGATGC CTTCTTCTGG
ATCGGCGGTC TGCCGACGGC TGCGGTGACC GACCTGGTTA CGACCGAGTC GGTGGTCTTT
ATCGACACCA GTTCGCTGCT GAAGCCGATG GTGGATAAGT ATGGTCCAAT CTACGCCGCT
ACCGTGCTGC CTGGCGGCAC CTACAAAGGG ACGGACCAGG ATGTGCCGGG GATTGGCGTT
GCCAACCTGC TCGTGGTGCG CGAGGATATG CCCGCTGACC AGGTAAAAGG CATTCTGACC
ACAATTTTCG ACAATCTCGA AGAAGTGCAT CAGATCCATC CCGCAGCGCG CACCCTGTCG
CTTGAATCGG CAGTCACCGG TTCATCGATA CCGTTCCATC CGGCTGCAAT CGAGTTCTAC
AAGGAACGTG GCGTTTGGAA GGAGTGA
|
|---|
| Protein sequence | MVKRTLVVFW SIMALVLAAC GQPTPAAPTT APSAPTTAPS GEQPTTAPAA PSGEKLRLII
GTGGTGGVFF PYGGGLARIL TEKMPNTEAT AQETGGSVDN MKLLQNSEAQ IGFTTADSAY
DGINGVAAYQ ATGPVPAATI AVLYQSFIHV VARADSGITS VADMKGRPVS IGSAGSSTET
AAIRLLEAAG LKPEDVVREN LGVADSVAAM KDKKIDAFFW IGGLPTAAVT DLVTTESVVF
IDTSSLLKPM VDKYGPIYAA TVLPGGTYKG TDQDVPGIGV ANLLVVREDM PADQVKGILT
TIFDNLEEVH QIHPAARTLS LESAVTGSSI PFHPAAIEFY KERGVWKE
|
|---|
| |