Gene Rcas_4416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4416 
Symbol 
ID5541929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5670214 
End bp5670999 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content57% 
IMG OID640896514 
Producthypothetical protein 
Protein accessionYP_001434450 
Protein GI156744321 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2981] Uncharacterized protein involved in cysteine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.921944 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0304901 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAAAT TCCTCACCGG CGCCTCTTAT CCGCTGCGCG CTCTCGGCGT TCTCAGACGC 
CATCCGACAC TCTGGCAGTA TATTATCGTC CCCGTCTTCC TGAATATATT TGTGGGCATC
ACTCTCTACG CCGGTTTGCT CGTTGCCGGA TTTCGCGCTA TTGATGGGGT TATCGCCGGT
CTGCCCGAAT GGCTGGCATT CATCGCCTGG TTGCTCCGCG CGCTGTTGAT CGTCGTGCTT
CTGATTGCAA CCGGTTATGT GCTGGTTCGC TTCGGCGTGG TGATTGGCTC GCCATTCTAC
AGCCGTCTCT CGGAACGCCT GGAAGAACGT TTCAGCGGCG TCGTATTCGA TGCGCCCCCG
CCGACTGTGG GGAATGTAGC ACGGGATATT GCTCGCGCTC TGCTGTTCGA GATCAAGAAA
CTAATCCTGG CGCTGACTAT CGGTGCACCA ACGTTGCTCC TGAATCTCAT TCCGTTCGTT
GGTTCATTGC TGGCGACGGC AGGCGGCATT GCGCTCAGTG CAACCATTTC CTGCCTCGAT
TTTTTCGATC CGCCGCTCGA GCGGCGCCGA CTGCGCTTTC GCGATAAATT GGGATTCGTG
CGACAGGGTT TGCCCGCAAC AGCCGGATTT GGACTGGTCT GTCTCGGTCT GGTGAGTATT
CCCCTGATCA ACCTGTTGGC CGTGCCTCTC TGCATCACTG CCGGCACCCT CTTTTACTGC
GATAGACACG GAAGTGAGCA TGCATTGTCA GGCAACGGAT CGTCTCCACA GGCTGGATCG
AATTAG
 
Protein sequence
MQKFLTGASY PLRALGVLRR HPTLWQYIIV PVFLNIFVGI TLYAGLLVAG FRAIDGVIAG 
LPEWLAFIAW LLRALLIVVL LIATGYVLVR FGVVIGSPFY SRLSERLEER FSGVVFDAPP
PTVGNVARDI ARALLFEIKK LILALTIGAP TLLLNLIPFV GSLLATAGGI ALSATISCLD
FFDPPLERRR LRFRDKLGFV RQGLPATAGF GLVCLGLVSI PLINLLAVPL CITAGTLFYC
DRHGSEHALS GNGSSPQAGS N