| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4411 |
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| Symbol | |
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| ID | 5541924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5663229 |
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| End bp | 5664692 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640896509 |
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| Product | deoxyribodipyrimidine photo-lyase |
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| Protein accession | YP_001434445 |
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| Protein GI | 156744316 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
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| TIGRFAM ID | [TIGR02765] cryptochrome, DASH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00088119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0752784 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTGGA TCCACTGGTT TCGCCGCGAT CTGCGTCTGC ACGACAATCC AGCGTTGCAC
ACCGCCAGCA TTCGGAGCGA TGGGCGAGTC ATCCCGCTCT TCATCCTTGA CGACGCCATT
CTGCATGCGC CACGCACCGG CGCCGCGCGT ATCGCGTTCA TGATCGCCGC ACTGCGCGAT
CTCGACGCCA ACCTGCGCGC GCGCGGCAGT CGCCTGGTGA TCCGGCGTGG ACGGACGCTC
GACGTGATCC GCGCCATGGT GCAGGAAACC GGCGCCACCG GCGTTGCCTG GAACCGTGAC
TACACCCCGT TTGCGCGACG GCGCGATGCG CAGGTCGAAG CGGCGCTGCG TGATCTGAAC
GTCGAGACCT CTATTGCGGA AGACGCGGTC GTCTTCAGTC CCGACGACGT GCGTACCGGC
GATGGACGCC CCTATACGGT GTACACGCCT TACCGGCGAC GCTGGCGCGC GCTGACAGAA
CAGCGGCGCG CGGAGGTGCT GCGCGCGATC GAGCCGCCGC TTTTGCGCCC GGCGCCCGAA
GCCGTTGCAG ATCAGACAGT TCCAGACCAT GCAGACCTCG GCATCGTGGT TTCCCAACGC
ATTCCTCCAG GCGGCGAAAC GCATGGCGCT GCGCGACTGG CGGCATTTGT CGATCTGGCT
GCCGCACACA GCATCGCGGG CTACGCAGAA GGGCGCGATC TGCTGGCAGA ACCGGCGACC
TCGCGCCTGT CGCCCTACCT GCGGTTTGGG TGCGTGGCGC CGCGGCAGGC GCTGCGCGCA
GCGCTGCGCC TGCTCGACAT CGTCGGCGAT GATCACCGTA CCGTCCGATC GATTGAAACC
TGGATCGGGG AACTCGCCTG GCGCGATTTC TACTATCAGA TTCTATGGCA CTACCCGCAT
GTGGTGCGCC GATCGTTCAA ACCGCAGTAC GATGCGCTGG CGTGGGAAAA CGACCCGGCG
CTGTTCGACG CCTGGAAGGA AGGTCGCACC GGCTACCCGA TCATTGATGC TGCTATGCAC
CAGTTGCGTC AGGAAGCCTG GATGCACAAC CGGGCGCGCA TGATCGTCGC TTCGTTTCTG
ACGAAAGATC TGTTGATCGA CTGGCGCTGG GGCGAACGCT ACTTTATGCA GCAACTGGTC
GATGGCGATC ACGCCGCCAA TAATGGCGGA TGGCAGTGGA GCGCCGGGAC AGGCACCGAT
GCACAACCCT ACTTCCGAAT CTTCAATCCG GTCAGTCAGG GACAAAAATT CGATCCAAAG
GGCTTGTATG TGCGCCGCTA TCTGCCAGAA CTGGCGCAGG TTCCAGACCG CTACATCCAC
GCGCCGTGGA CAATGCCGCG CGCAGAACAG CAACGGTGCG GCGTTGTCAT CGGGCGCGAC
TACCCCGCGC CGATTGTCGA TCATGCAGAA CGACGAATGC GCGCACTGGC GCTCTATCGC
GCAGTATCGT CGGTTGCGCT TTAG
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| Protein sequence | MIWIHWFRRD LRLHDNPALH TASIRSDGRV IPLFILDDAI LHAPRTGAAR IAFMIAALRD
LDANLRARGS RLVIRRGRTL DVIRAMVQET GATGVAWNRD YTPFARRRDA QVEAALRDLN
VETSIAEDAV VFSPDDVRTG DGRPYTVYTP YRRRWRALTE QRRAEVLRAI EPPLLRPAPE
AVADQTVPDH ADLGIVVSQR IPPGGETHGA ARLAAFVDLA AAHSIAGYAE GRDLLAEPAT
SRLSPYLRFG CVAPRQALRA ALRLLDIVGD DHRTVRSIET WIGELAWRDF YYQILWHYPH
VVRRSFKPQY DALAWENDPA LFDAWKEGRT GYPIIDAAMH QLRQEAWMHN RARMIVASFL
TKDLLIDWRW GERYFMQQLV DGDHAANNGG WQWSAGTGTD AQPYFRIFNP VSQGQKFDPK
GLYVRRYLPE LAQVPDRYIH APWTMPRAEQ QRCGVVIGRD YPAPIVDHAE RRMRALALYR
AVSSVAL
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