Gene Rcas_4392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4392 
Symbol 
ID5541905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5644627 
End bp5646474 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content62% 
IMG OID640896492 
Productchaperone protein DnaK 
Protein accessionYP_001434428 
Protein GI156744299 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0443] Molecular chaperone 
TIGRFAM ID[TIGR02350] chaperone protein DnaK 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.253837 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.258584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAAA TCATCGGGAT CGACCTTGGC ACGACCAATT CCGTCGTCGC GGTGATGGAA 
GGCGGCGAAC CGGTGGTTAT TGCCAATGCC GAGGGGAGCC GCCTGACCCC TTCGGTCGTT
GCGGTCAATA AGGCGGGTGA ACGTCTGGTC GGGCAGACTG CCAGACGGCA GGCGGTCGTA
AACCCGGAAC ACACGATTTT CTCGGTCAAA CGCTTCATCG GGCGCAAACT GTCTGATCCG
GCGGTGCAGA AGAGCCGGGC GCTGGCGCCG TATCGCCTGG TCGAGGCGCC AAACGGCGAT
GCCTGGGTGC ATATGGGTGG GCGCGATTAT AGCCCGCAGG AGATTTCGGC GTTTGTGCTG
CAAAAACTCA AAGCCGACGC CGAGGCGCAC CTGGGCGAAC CGGTGACGCA GGCGGTGATT
ACGGTTCCTG CCTATTTCAA CGACAGTCAG CGCCAGGCGA CGCGCGATGC CGGTCGGATC
GCCGGACTGG AGGTGGTGCG CATTATCAAT GAGCCGACGG CGTCGGCGCT GGCGTATGGT
CTCGACCAGA ATACGCACAA TCATGTGATC GCGGTCTATG ATCTCGGCGG CGGCACGTTC
GATATTTCGA TCCTCGAACT CGGCGACGGG GTCTTCGAGG TGAAAGCCAC CAACGGCGAT
ACGCACCTCG GCGGTGATGA TTTCGATCAG CGCATCATCG AATGGATGGC AGCCGCGTTT
CAGCAGGAGC ACGGCATCGA TCTGCGCGCG GATCGGGCCG CTCTGCAACG GATGAAGGAG
GCGGCTGAGC GCGCCAAGCA GGAACTTTCA ACCGTTGTGC AGACGGAGAT CAGTCTGCCG
TTCATCACTG CCGACTCCAG TGGTCCGCTC CATCTGCATA TGACGCTGAC CCGCGCCAGA
CTGGAGCAAC TGACTGCCGA TCTGATCGAA CGCACCATTG GTCCGATGCG GCAGGCGCTT
GCCGATGCCG GGATGCGTCC GAACGATATC GACGCTGTGG TGCTCGTCGG CGGGCAGACG
CGCATGCCCG CCGTGCAGGA GATGGTGCGC CGGTTTTTCA ACCGCGAGCC GCATCGGGGC
GTGAACCCGG ATGAGGTTGT GGCGATTGGC GCCGCGATTC AGGCTGGCGT GCTCGCCGGG
GAGGTGGGGC ATGTGGTGCT GCTCGATGTG ACGCCGCTGA CCCTGGGCAT CGAAACGCTT
GGTGGGGTGA TGACACCGCT CATCGAGCGC AATACGACGA TTCCAACCCG GAAAAGCCAG
GTGTTCTCTA CCGCTTCGGA TAACCAGAGT AGCGTCGAAA TCCACGTGTT GCAGGGTGAA
CGTGTCGAAG CGCGCGCCAA TAAGTCGCTC GGACGGTTCG TGCTGGACGG CATTCCGCCA
GCGCCGCGCG GCGTACCTCA GATTGAGGTG ACGTTCGATA TCGATGCGAA TGGCATTTTG
AACGTCTCAG CCGCCGATAT GCGCACCGGC GCAGCGCAAC GTATTACGAT TACGGCATCG
TCAGGGCTGT CTGAAGATGA AATCCAGCGC ATGATCGCGG AAGCGGAACA GTACGCCGAA
GAGGATCGCC GACGGCGCGA ACTGATAGCG GCGCGGAATG CGGCGGATAG CGCGATCTAC
CAGGCGGAGC GCCTGCTGCG TGAGACAGGG GAAGCCATCG ACGAAGCCGT GCAGGCGCAG
GTGCGCGACC GGATCGCAGC CGCGCGGCTG GCGGCCGAGG GCGATGATAC GAATGAGATT
CGGAATCGGA TAGCGGAACT CACGGTTGCG GTGCAGCAGG CGGTGCGGAC AACCAACACG
CGCAGCGCCG CCGGCGGGGA CGCGGATCGC GAAAACGATA TGCGTTGA
 
Protein sequence
MSKIIGIDLG TTNSVVAVME GGEPVVIANA EGSRLTPSVV AVNKAGERLV GQTARRQAVV 
NPEHTIFSVK RFIGRKLSDP AVQKSRALAP YRLVEAPNGD AWVHMGGRDY SPQEISAFVL
QKLKADAEAH LGEPVTQAVI TVPAYFNDSQ RQATRDAGRI AGLEVVRIIN EPTASALAYG
LDQNTHNHVI AVYDLGGGTF DISILELGDG VFEVKATNGD THLGGDDFDQ RIIEWMAAAF
QQEHGIDLRA DRAALQRMKE AAERAKQELS TVVQTEISLP FITADSSGPL HLHMTLTRAR
LEQLTADLIE RTIGPMRQAL ADAGMRPNDI DAVVLVGGQT RMPAVQEMVR RFFNREPHRG
VNPDEVVAIG AAIQAGVLAG EVGHVVLLDV TPLTLGIETL GGVMTPLIER NTTIPTRKSQ
VFSTASDNQS SVEIHVLQGE RVEARANKSL GRFVLDGIPP APRGVPQIEV TFDIDANGIL
NVSAADMRTG AAQRITITAS SGLSEDEIQR MIAEAEQYAE EDRRRRELIA ARNAADSAIY
QAERLLRETG EAIDEAVQAQ VRDRIAAARL AAEGDDTNEI RNRIAELTVA VQQAVRTTNT
RSAAGGDADR ENDMR