| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4357 |
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| Symbol | |
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| ID | 5541870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5611043 |
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| End bp | 5612587 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640896463 |
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| Product | H+transporting two-sector ATPase delta/epsilon subunit |
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| Protein accession | YP_001434399 |
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| Protein GI | 156744270 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.155847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCATC AATCCTTCCT TTCCTGCACC GCACTCTTTG TTCTGGCGCT CGCGCTGCTC
ACTGCCTGTG GCGGTGCAAC GGTGCAGACC GTGCCAACTC CCACGCCGCG TCCGATCCAG
AATGTGCTGG AAAAACCGAC ATACACCGTG CAGCGCGGCG TGGTCGTCGA TGAGATCAAG
GTCAGTGGGT TCGTTGCTGC CACCAAACAG GTAGAACTGT CGTTCACCCA GAATGGCTTT
CTCAAGGTGT TGTACGTTGA TCGCAACGAT CCGGTGACGA AGGGGCAGTT GCTCGCCGAA
CTCGAAATGG GCGATCTGCC GAATCAGTTG CGGCAGGCGG AAGTGGCGCT GGAACAGGCG
CAACTGGTGC TGAACCGCTC GAAAGCGCAG CGCGATGCAG CCATCCGCCG CGCCGAACTC
GACCTGGAAG AAGCGCAGGC GCAACTACGT CGTCTGCAAG AGCCGCCAGA ACCGCTCGAC
GTGGCGCGTG CGCAGGCGAA CCTGGCGCAG GCGCAGGCAA ACCTTGAGCA GGTGCGCACC
AACGCCTCTG CTGAAAAGAC GCGCGCCGAA ATGGCGCTTG CGCAGGCGTC CAATGCTCTG
CCCGCGATCC AGACGGCGTA CCTGCGCGCG CTGACCGAAT GGAACGATGT CAAAGATAAA
CCGCAGGACT GGCGCTACAA CGCGGTGAAA GAAGCCTTCG AGCGCGCCGA AGCCGAACTG
CGTAACGCCG AAATGGCGGT TCGCCAGGCG CAACTGGCGT ATGATCAGGC ACGCCAGAAC
GAAGGACCGG CAATCGCGCG CGCCGAGGCG CTGCTGGCGG AGGCGCAGGC TGCTTACGAT
GCGCTGACGC GCGGACCGAA ACCGGAGGAC CTGGCGCGTG CGCGGCGCAA TGTCGAACGG
GCGCAGATTG CCGTCGAGGA GGCGAAGCAG ATCGGCGATA GCGAACTCGA AGGGCGGGTC
GCCGCCGCGC AACTGGAGGT CGAGCGCCTG AAGACGCAGA TGGAAGCGAT GCGCCTCTAT
GCGCCTTTCA ACGGCAAGGT TGCGGCAGTC GGCAATAAGC CGGGCGATCA GATCACGGCC
TACCGTGCGG TTATCACGGT GATGGACGAT ACCGAAAAAG AATTGCTGGT CGAAAATGTC
GCGTCGCAGG ATGCCTCCCG AATTGGGTTG GGGCAGCAGG TGCAGATCAC CTTCTCGCGT
GCGCCGGGCA AAGTGTTCGA CGGCGTGGTG ACGAAACTGC CTACCACGCT CACCAGCAGC
GCCGCGACGA TCAACCCCGA CCGCGCGTAC CATATCGATT TTCAGGCGCC GGGTGTCGAT
CTCGAAGTTG GCGATCTGGC GCAGGTGGTC ATTACCCTGA AGCGTGTTGA GGATGCGCTC
TGGCTGCCGC CGCAGGCGGT GCGCGCCTTC GAAGGTCGGC GGTTCGTCGT TGTCAAAGAA
GGCGACCGCC AGCGACGCCA GGATGTGCGA GTCGGTATCG TCAGCCTGGA ACGGATCGAA
ATCCTCGAAG GGGTGAAGGA AGGCGATATT GTCGTCGGAC AGTAA
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| Protein sequence | MKHQSFLSCT ALFVLALALL TACGGATVQT VPTPTPRPIQ NVLEKPTYTV QRGVVVDEIK
VSGFVAATKQ VELSFTQNGF LKVLYVDRND PVTKGQLLAE LEMGDLPNQL RQAEVALEQA
QLVLNRSKAQ RDAAIRRAEL DLEEAQAQLR RLQEPPEPLD VARAQANLAQ AQANLEQVRT
NASAEKTRAE MALAQASNAL PAIQTAYLRA LTEWNDVKDK PQDWRYNAVK EAFERAEAEL
RNAEMAVRQA QLAYDQARQN EGPAIARAEA LLAEAQAAYD ALTRGPKPED LARARRNVER
AQIAVEEAKQ IGDSELEGRV AAAQLEVERL KTQMEAMRLY APFNGKVAAV GNKPGDQITA
YRAVITVMDD TEKELLVENV ASQDASRIGL GQQVQITFSR APGKVFDGVV TKLPTTLTSS
AATINPDRAY HIDFQAPGVD LEVGDLAQVV ITLKRVEDAL WLPPQAVRAF EGRRFVVVKE
GDRQRRQDVR VGIVSLERIE ILEGVKEGDI VVGQ
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