| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4301 |
|---|
| Symbol | |
|---|
| ID | 5541812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5548521 |
|---|
| End bp | 5550260 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640896407 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001434345 |
|---|
| Protein GI | 156744216 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCTAT CGATCCGCAC CAAATTGCTG GCAGCGCTCG GCGTTGACCT GATCCTCATG
CTGGTGCTGG GCAGTTTTGC CCTGCACCAG ATGAGCATTA TGAACCAGAA AGCCGATTTT
GTCGTCAACC AGACGATCCT TTCGATTGAT CTGGTCAACG CAATGAACGA TGTGCTCCTG
AATTACCGTA CCCGACAGAT GGAGTACATC CTCAACGCCG CCCCTGCCGA CAAACAGCGC
ATCGAGAAGG AACTGCTGGA CCTCGAAACG CGCATGGACG GCATTTTCCG CAATTACAGC
GCCAACTATC AACCGGATGC GACGGAACGC CTGATCTTTG AACAGACGCA GCAGGACTGG
CAGCGCTACG TGTTTTTGAC ACACACCCAG TTTCTGCCGG CGAATCGCAA CAGCAACACC
GGGAATGTGC ATCCATCGTT TGGGCGGTTG TCACCGCTGT ATGGCAGCCT GCAAACGAAC
ATGCAGAAGA TCAGGGCGCA GAGTCAGGCG CGCGCCGAGG CGGCGCGCGC AAGCGTCGAA
ACGGCGTATT CCACCTCACG CTTTGTGATT GTGAGCGAAA CTATTCTGAC CGTATTCGTC
TCGGCGGTGA TTGGACTGAC CCTCTCCGGC AATATTGCCC GCCGCATTCG CACGCTGCGC
GATGCAACCA TTGCCGTTTC CGGCGGCGAT CTGAGCCGGC AGGTGTCGCT GCGCGGCGGC
GACGAACTGG TGTTGCTGGC GAACAATTTC AACCTGATGG TCGCCAGCCT GCGGCAGCAA
CGCATGCTGC TCGAAGAGCG CAATGCCGAA CTCTCAGCGA GCCTGGAGAC GCAACAACGG
TTGATGGAAG ACCTGGTGCA GCGCAAACAG GCGGAGGAAG CGGCGCATCG CGCGCAGGCG
GCGGCGGAAG CAGCCAGCCA CGCGAAGAGC ATGTTCCTGG CGACGATGAG CCACGAACTG
CGCACGCCGC TGAACGCGAT CCTGGGGTAT GTTCAGTTAT TGCACCTCGA AGCGCAAATC
CATGGACGAT CCGAGATGCT CCCCGATCTG GAGCGCATCC GTTCGGCGGG CAAGCATCTG
CTTACCATCA TCAGCAATAT TCTCGACTTC TCGAAGATTG AGCAGGGCCG GATGAATGTC
GAGATCGACA CCTTCAATGT GAGCGTGATT GCGCACGAAA TGATCAGCAT TATCGAACCG
CTGGCGCGCA ATCGCAACAA CACGCTGACC CTCACCTGCC CCCCAGACAT CGGTATGATG
CAGTCCGATG CGGGCAAAGT GCGTCAAATT CTCTTCAACC TGTTGAGCAA CGCGGTTAAG
TTTACCGATA ACGGCACGGT GGCGCTGACT ATCGAACGTG AATGTTGTTC TGACGGCGAT
TGGGTGCGCT TCAGCGTCGC TGACACTGGC ATTGGCATGT CGCCAGAACA ACTGACGCGT
CTGTTCCAAC CGTTCACACA GGTGCATCAG AGCCACTCGT CGCACGCACA TCGCGGCACG
GGCCTTGGGC TGGCGCTCAG TCAACAGTTA TGTCGCCTGC TCGGCGGCGA CATTTCGGTC
ACCAGCGAGG TCGGCAGAGG ATCGGTCTTC ACTGTGCGTT TGCCAGCAGT CATCAGCACT
GCCCATACCG CCGATGTACG TCTCGATTTT GCGCAACACA TACGAAGCGC GACTCGCCAC
GACGTGGATC ATGCCACTAC GGCGCCATCA CCGTACACAA CGACAACGCT CAGCGCGTAG
|
|---|
| Protein sequence | MNLSIRTKLL AALGVDLILM LVLGSFALHQ MSIMNQKADF VVNQTILSID LVNAMNDVLL
NYRTRQMEYI LNAAPADKQR IEKELLDLET RMDGIFRNYS ANYQPDATER LIFEQTQQDW
QRYVFLTHTQ FLPANRNSNT GNVHPSFGRL SPLYGSLQTN MQKIRAQSQA RAEAARASVE
TAYSTSRFVI VSETILTVFV SAVIGLTLSG NIARRIRTLR DATIAVSGGD LSRQVSLRGG
DELVLLANNF NLMVASLRQQ RMLLEERNAE LSASLETQQR LMEDLVQRKQ AEEAAHRAQA
AAEAASHAKS MFLATMSHEL RTPLNAILGY VQLLHLEAQI HGRSEMLPDL ERIRSAGKHL
LTIISNILDF SKIEQGRMNV EIDTFNVSVI AHEMISIIEP LARNRNNTLT LTCPPDIGMM
QSDAGKVRQI LFNLLSNAVK FTDNGTVALT IERECCSDGD WVRFSVADTG IGMSPEQLTR
LFQPFTQVHQ SHSSHAHRGT GLGLALSQQL CRLLGGDISV TSEVGRGSVF TVRLPAVIST
AHTADVRLDF AQHIRSATRH DVDHATTAPS PYTTTTLSA
|
|---|
| |