| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4227 |
|---|
| Symbol | |
|---|
| ID | 5541738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5467730 |
|---|
| End bp | 5468371 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896334 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001434272 |
|---|
| Protein GI | 156744143 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.624898 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTC GTATTCTGCT CGTAGATGAC CACGCGGTGG TCCGTCAGGG GTTGAAGATG
TTTCTCGGTC TCGACCCAGA CCTTCAGGTC GTGGGCGAAG CGGAGAACGG GGAAGAAGCC
ATCCGCCTGA CGGGGGAGTT GAATCCCGAC GTCGTCTTGA TGGATTTGCT CATGCCAGTC
ATGGATGGCG TGACTGCCAT TGCGCGCATC CGCCGCGATT TTCCTGATAC CGAAGTTATC
GCCCTGACCA GCGTGCTGGA AGACGAAGCC GTGATGAAAG CCATGCGCGC GGGAGCGATG
GGCTATTTGC TCAAAGATAC GCAGGCGGAA GAATTGCGCC GCGCCATTAA AGCCGCCGCA
GCGGGGCAGG TGCAACTCTC GCCGCGAGCC GCCGCGCGGC TGATGCGCGA CGTGCGCGCC
CCCGAAAGCC CCGAAAAACT GACCGAGCGC GAAACCGATG TGTTGCGTCT GCTGGCATTG
GGTCGCGCCA ACAAGGAGAT TGCGCGCGAA CTCAACATCG GCGAGAAGAC CGTCAAGACG
CACGTTAGCG CCATTTTGCG CAAATTGGAT GTGCCGAGCC GCACGCAAGC CGCCTTATAT
GCTGTGCGGA TTGGGCTGGT GTCTATCGAA GGGGAGACAT AG
|
|---|
| Protein sequence | MSIRILLVDD HAVVRQGLKM FLGLDPDLQV VGEAENGEEA IRLTGELNPD VVLMDLLMPV
MDGVTAIARI RRDFPDTEVI ALTSVLEDEA VMKAMRAGAM GYLLKDTQAE ELRRAIKAAA
AGQVQLSPRA AARLMRDVRA PESPEKLTER ETDVLRLLAL GRANKEIARE LNIGEKTVKT
HVSAILRKLD VPSRTQAALY AVRIGLVSIE GET
|
|---|
| |