Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4206 |
Symbol | |
ID | 5541717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5439744 |
End bp | 5441969 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640896313 |
Product | CheA signal transduction histidine kinase |
Protein accession | YP_001434251 |
Protein GI | 156744122 |
COG category | [K] Transcription [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.351121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.245941 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCTGG CGTCGTTCTA CAGCCAATTT CGTGATGAAA CGGCGGAGAA CATCCGCATT GTCACCGAAG GTCTTGTGGC GCTCGAAGGC AACGGACTGG AGGGCGAGGC GCGCCGTGAG CGGATCGACG CCATCTTTCG CGCCATGCAC ACGATCAAGG GGTCGGCGCG AATGCTCGGT CTGGATCAGA TCGGCAAAGT TGCGCACACC TGTGAGCACA TCCTGGCAGC AGTGCGCGAC GGTCGGCGCG TTCTTGATCG CTTTCTCACC GATGAATTAC TGAAGGGCAG CGATGCGATT CTGGAGTTGC TGGCAGCCGC TATCGATGGC AAGCCGTCGT CGATTGACGT TGAAGCGCTG ACGAGCCATC TTGGACGAGG ATCGCCACAG CCTTCGCCTG AAACGCCGGT GTCACCCCCG CTCGAACCGG CGCAATCGCC CGGTGATGAA AGCGCGCCAC AACCCACGTC GAAGGGTGGG CGCGAACGTA TGCGACAGAC GGTGCGCGTG CGGGTGGATC GCCTGGATCG GTTACTGAAT CTGGCAGGCG AATTGTCAAT CGGTCGGCAG ATTGAGGAAT CGCACCTTCA GGCGTTAGAG GAGTTGAAGG GGTTGGTTGA ACGCCAACAA CGGTCGTTGC TCACCCTCGA AGCCGAATTG CGCCGTGTGC GCCTTGCCCC TGCCCAGCGC GACCTGTTCG ACCGCGAAAT GAACGGTGCG CTGAACGCAG GCGAGCGCGC CGGTTCCATG CTCAGAGCTC AACTCGAACG CATCGGACAA CATACGATGC ACAAAGCGCA GTTGATCGAC GACCTCGAAC AAGAGGTGAT GGCGATTCGC CTGACGCCGG TCGCAACGCT GTACGCCAAT CTGCCGCGCG CCGTGCGCGA ACTGGCGCGC GATCTTGGCA AGGAAGCATC GCTGGCGCTG ATCGGCGAAA CGACCGAACT GGATCGGAAG ATCATCGAGG TGCTCACCGA TCCGATGGTG CACTTAATTC GGAATGCGCT CGATCACGGC ATCGAGCCGG CAGAGGAACG TGAGCGCCAG GGTAAGCCGC GCCAGGGATT GATCGAGATC GCAGCACAGG CGCATGGCGG ACGAGTGTTG ATCAGCGTGC GCGACGATGG GCGCGGCATG GATCCACAAC AGTTGCGCGA GGCGGCAGTG CGCAAAGGAT TGATCGGCGC TGATGCCGCA GCAGCGCTCT CAGATCAGGA GGCGCTGGAA TTGATCTTCA TGCCGGGCTT TACGACGGCA AAAATCATTA CCGACGTATC AGGACGAGGC GTCGGGATGG ATGTGGTTCG CACCAATCTT GCCGAGATTG GCGGGGAAGT GCAGATTGAG TCGCAGCCAG GCGTCGGTAC GACGGTCCTC CTCTCGTTGC CATTGACCCT GGTTACCACG CGGGTGCTGT TGGTTGAGGC TGGCAGTCAA CTGTTCGGCA TTCCGGCGTC GGGGTGCCAG GGAACGGTAT GGGTGCGCCG CACTCAGATC CGCACTATCG AGGGTCGGGC GGTTTTTCAG CACAATCAGG TGTTAACGCC GATCCTGCGG TTGGATGAAT TGTTGGGTAT TGCGAATGGG AATCCGTTTG CCAATGCAGT GCGCATGCCG GCGTTGCTGA TCGGTGGTGT GCGCCGCCCT ATGGCGTTGC TGATCGATCG CCTGATTGAT GAACGCGAGG CGGTGATCAA GCCGCTTGGA CCCCTCCTGG AAAAACAGCG GCGGTATAGC GGCGTATTGC AACTCGGCGA TGGAAGGCTG GCGCTGCTGC TCAATCCCAC GATGCTGGCG CAATTGGGAC GCGGCACGGC GCTTGTTGCG CCAACGCCGG AACAGAGTCA GCAGCGCCGC GCGCGATTAC TCGTGGTGGA CGACTCGTTC GCTACTCGCG AGTTGATCCG CAGCATCCTG AGCGCCGCCG GGTACGAGGT GGCGACTGCC GTCGATGGGC TTGATGCGCT TGACAGAATC CGCGCCGAAA CCTACGATCT CGTCGTCAGC GACGTCGAAA TGCCGCGCGT GGACGGTTTC ACTCTGACCA GCCGCATCCG CAGCGAGTTG GGCAAAACCG ATCTGCCGGT CATTATCGTC ACCAGTCTGG CATCGGAGGC GCATCGCCGG CGTGGGCTGG AAGTCGGTGC GCAGGCGTAT ATTGTCAAAA GTCAGTTCAA TCAGAACAAC CTGCTGGAGA CGATCCGGCA GTTGATCGGC ATGTGA
|
Protein sequence | MDLASFYSQF RDETAENIRI VTEGLVALEG NGLEGEARRE RIDAIFRAMH TIKGSARMLG LDQIGKVAHT CEHILAAVRD GRRVLDRFLT DELLKGSDAI LELLAAAIDG KPSSIDVEAL TSHLGRGSPQ PSPETPVSPP LEPAQSPGDE SAPQPTSKGG RERMRQTVRV RVDRLDRLLN LAGELSIGRQ IEESHLQALE ELKGLVERQQ RSLLTLEAEL RRVRLAPAQR DLFDREMNGA LNAGERAGSM LRAQLERIGQ HTMHKAQLID DLEQEVMAIR LTPVATLYAN LPRAVRELAR DLGKEASLAL IGETTELDRK IIEVLTDPMV HLIRNALDHG IEPAEERERQ GKPRQGLIEI AAQAHGGRVL ISVRDDGRGM DPQQLREAAV RKGLIGADAA AALSDQEALE LIFMPGFTTA KIITDVSGRG VGMDVVRTNL AEIGGEVQIE SQPGVGTTVL LSLPLTLVTT RVLLVEAGSQ LFGIPASGCQ GTVWVRRTQI RTIEGRAVFQ HNQVLTPILR LDELLGIANG NPFANAVRMP ALLIGGVRRP MALLIDRLID EREAVIKPLG PLLEKQRRYS GVLQLGDGRL ALLLNPTMLA QLGRGTALVA PTPEQSQQRR ARLLVVDDSF ATRELIRSIL SAAGYEVATA VDGLDALDRI RAETYDLVVS DVEMPRVDGF TLTSRIRSEL GKTDLPVIIV TSLASEAHRR RGLEVGAQAY IVKSQFNQNN LLETIRQLIG M
|
| |