| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4193 |
|---|
| Symbol | |
|---|
| ID | 5541704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5423743 |
|---|
| End bp | 5424909 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896303 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001434241 |
|---|
| Protein GI | 156744112 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.512657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00496827 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGCTA TGAACGACAC TGACGTGTTG AGTCAGGTTA TCGAGCGCCA GCAGACGCCG
GCATTGCAAC GCATCCTGAT TGCCATCAGC AGCGCAGCAC TGGTTGCGCT GATCGTCTTC
TTTGCGGCGC TAGGGGTCAA CCCGACCGGC GGCGTTCCTG CAACCGGCGC GATTGTGGTC
ATGATAACCA GTATGACGGG GGTGGCAGTC CTCCGGCGCG GACGATTTCG CATGGCGGTG
GTGATTGCTT CCTCCGGTCT GGTCGGCGCT GTCTTCCTCG TCACCGTCAT CTACGGCTAT
CCGGCGGCGG CGGCGTTCTT GCTGGTGACG CTTATACCGG TCATTCTGAC CGGTCTCCTG
ATCGAAACCA GCCGTTTGAT CGCGGTCGCT GTGGCAAGTG GATTGATTCC TGCCTTCATT
TTCTTTCTCA AGCCGGCGCT CGCACCGTTC ATCGCCGCAG TACGACCTCC TGCCGACCTG
ACGATCGTTG CGGTAGCGCT CTTCCTTCTC GTGCTCTTTG TGATCACGAC AATCATCGCA
TCGTTTGGTC CGGTCCTTCG TCAAGCGCTG ACAACTGCGC TGGTGCGCGG GCAAGAACTC
GAACGTTTGC GCGACTCGCT GGAAATGATG GTGCAGGAAC GCACGACAGA CCTGCAAGCA
GCGCTTCGCG CCGTTGAGCA GCGTGAGGCG CAGTTGCAAC AGGCGCTCAC CGATCTGCGC
GCAAGTCAGG AAACTGTCCG CAAATTGAGC GCACCCGTCC TGCCGGTGTT GCCCGGCGTG
CTGGTTGCGC CGCTTATCGG CGCTATCGAC GAAGCACGTG CAGAGGCGTT TGTTTCCAAT
GTATTGCATG CCATTGAACG CGAGCGCGCC CGCCATGTGA TTTTCGACAT CACCGGTGTT
CCGCTGGTCG ATACACAGGT AGCCCGCATG ATTCTGAGCG CTGCCGATGC TGCGCATTTG
CTGGGTGCAA AGGTGACTCT GGTCGGTATT CGCCCAGAAG TGGCGCAGAC GGTCGTGGGG
TTGGGGGTGA CGCTTGGGCA GATACGCACT TTTGCGAATT TGCAACAGGC GATTAGCGCA
CTGCACGACG TGTCATCTGC TGGCGTGCAT CGGCAGAATG CGCCTGCTGG CATGGATGCC
CGATTGCCGG CCGCAAGAGA CGCCTGA
|
|---|
| Protein sequence | MPAMNDTDVL SQVIERQQTP ALQRILIAIS SAALVALIVF FAALGVNPTG GVPATGAIVV
MITSMTGVAV LRRGRFRMAV VIASSGLVGA VFLVTVIYGY PAAAAFLLVT LIPVILTGLL
IETSRLIAVA VASGLIPAFI FFLKPALAPF IAAVRPPADL TIVAVALFLL VLFVITTIIA
SFGPVLRQAL TTALVRGQEL ERLRDSLEMM VQERTTDLQA ALRAVEQREA QLQQALTDLR
ASQETVRKLS APVLPVLPGV LVAPLIGAID EARAEAFVSN VLHAIERERA RHVIFDITGV
PLVDTQVARM ILSAADAAHL LGAKVTLVGI RPEVAQTVVG LGVTLGQIRT FANLQQAISA
LHDVSSAGVH RQNAPAGMDA RLPAARDA
|
|---|
| |