| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4188 |
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| Symbol | |
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| ID | 5541699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5417054 |
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| End bp | 5420596 |
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| Gene Length | 3543 bp |
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| Protein Length | 1180 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640896298 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001434236 |
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| Protein GI | 156744107 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000134392 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGTCC ATTCACAACA CATTCGCGCA TTCGCACGCG ATATTCGCCG ATCCTACCTG
GAGCGCAGCG GTGGCGCGCC GGCTCATCCG CTTCCGCTTG ACGATCTGGC GGAGACCCTT
TGGGGGTTGA CCGTTGTTCC GACGATGACG CTCGCTGCGG GCATTCAGGG AAAGGTCGAG
CCGGAACTTC AGGTCATTCG GGTGCGGCGC GATCTTCCGC CGACCCGCCA GCGCTTTGTA
GTGGCGCATG AAATTGGTCA CGTGGCGCTC GAAGGATTGA CTGCCGGTCC CTTCCGCGAC
ACCGACGATA CGCTCGATGA GCGCGCGGTT GGTGAGGACG CCGATGAGAC GGCAGTGCGC
ACCTACAACA CGCGCGAGCG GCGCGAACGA GAGGCGAACC TTTTTGCGCT CGAACTGCTG
GCGCCGGCGG AGGATATCTG GCAGGCGGTG CAACAACCGG ATTGGAGCAT CGAAACCCTG
GCGGCGCACT TCGCTGTTTC GTCCGATGCC CTTTGCGCGC AGTTGGCGAA TGTCTGCCTC
CTCGAACCGC CGGTGTCGCC GGAAGCGTCG GTTAACGCGC GCACCACTTT ATGTATTCTC
GACCAGGAGC AGCAGGCGGC GGTCGATGCG CCGCTGCCGC TGTTGCTCGC CGCAGGACCT
GGCACCGGCA AGACGCGCAG CATTGTGGCG AAGTATGTGT CGCTGGTGCG TCAGGGGGTC
GATCCGGCGT CTATTCTGGC GCTGACATTC TCGAACCGGG CGGCGGAAGA GATGCGTGAG
CGGATCGTTG CGGCGCTTCG ACACGAGGCG CCGCGTCTTG TCGGGCGCAT CGAGATCAGC
ACGTTTCACT CATGGGGCTT GAATGTGCTG CGGATCTACG GAGCACGCCT CGGGCTGCCG
GTTGATGCGC GTTTGCTCGA TACTGCCGAT CTCTTCATCC TACTGTCGAA ACGCCTGAAC
GATCTGCGTC TGGCGTATTT CAAAGATGTG CGCGAACCGA CCCGGCATCT GTTGACGATT
ATTCAGGCAA TCAGTCGTAT CAAGGATGAA CTGTGGTCGC CTGATGAGTT TTCGCGTCTG
GCGGACGTGG AAGCGCAACG CCTGATCGCA GCAGCGGAAC GGGATTATCC CGGCGCGACC
CGCAAAGCGA TCGAAGCGCG CGAACGCGCT GCGCGACAGG CTGCCGCTCT GCGTGAATTG
GCGCAGGTCT ATCCACGCTA CGAAGCCATG CTGCGCGAAG CGGGCGCACT CGATTATGGC
GATCTGATTG TTCTGCCGGC GCAGGCGTTG CGCGACCATC CGGCAATCGC CGCCGATCTC
CGCCGGCGCT ACCACTACCT GCTCGTTGAC GAGTTTCAGG ACATCAACTA TGCGTCGGGT
GAACTCATCC GGTTGCTCGA TGGCGGGCGT GGGCGGGTGT GGGCAGTCGG CGATGCGTGG
CAGAGCATTT ACCGCTTTCG TGGCGCTTCC GCCGCGAACC TCGACGAATT TCCACGGTAT
TATCCGAATG CGCGTATCTT CTACCTGACG CGCAACTATC GTTCGCTGCA ACCGATCCTC
GACGCCGGCG CTGCCGTGAT GTCTGGCGAT CCGCGCGCCG CCGAACGACC TCCGCTTGTG
GCACAGCGCA ACGGCGGTGG GGCGCACACG GTCGTTGAGT GGGCTGCGCC GCGCAGCCAG
GATGAATATG CCGCTCTTGC CCGTGATATT CTGCGCCGGG TGCGACTGCG CAATCGCTGG
TTGGCATCGG GCTGCGCGGC GCGGTGTCGG ATGCCGCGCT CTGGAACGAT GCGGCGAGTG
GCGCGCCGTC CCCCGCTTTC GACCCGCCAG TGGCGTTTTG GTGATCATGC CATCCTCTGC
CGCACCCACG AGCAGGCAGG CGCGGTTGCT GCTGTGCTTG AAACGCACGG CATTCCCGTC
GATTACATCA ACGACGTGTT CGATACACCC GGCGTCAAGG ATGCCCTGGC AGTCTGCGCT
CAGGTTGGTG CAACCAATAG CGCCGGGTTG TTGCGCGCGC TGACGATGCC CGAACATCGG
CTCGACCCTG CCGATCTCAA CCGGTTGGTC GATCTGGCGC GACGAAGCCA GCAGGCGCTG
CCGCGCGCCG CGCGCGACCC GCAAATCATC GCCTGTCTCA GCGAGGCGGC TCAGCAAACG
CTCGCGCGGA TTCGGATAAT TGTGGAAGCG CTGGAAGGCG AAGGAGACGC CTGGCAGGTG
TTGACTGCAT ACCTGTTCCG GCACAGTCGG GCGATGCGCG CGCGGTTGAT CCACGCTGCA
CAGGGACATA TCCGGGCGCA GCGCGAACTT GCGGCGCTTG GTCAACTGCT TGCCATTGCG
CGCAACTTTG TGCGCGCGGC AGCGCCGGAT GAATGTGATG CATCGCATTT CATCGACTAC
ATTCGCGCCC TGCGCGCCGC TGGCGTGCGG CCACGATCAT CGATCGGCGG GCAGGTGGAC
GCGGTGCGGG TGATGACGGT GCATGCCGCG AAAGGGCTGG AGTTTCCGAT CGTGTACGTT
CCGGGATTGC AGGAAGGGCG ATTCCCGGTG CGTGGCAATC AGCGCGGCAT CCCATTGCCC
GCCGGTCTCA TTCGCGGTCC AATCGAGAGT GAAGAGCAGG AGGAACGCTA CCTGCTCTAT
GTGGCGATGA CCCGCGCGCG CGACCGGTTG GTGCTGAGCC GGTCGCTAAC GTGCGGCGAT
GGCGCGAAAT CGGCGGAGCG CTCGTCGCTG CTTCCCGGTG ACGGTCAGGG GAACGGCGCT
CCATGGCGCG TGCGATTCAT CGAAAGTGCA GTGAACTGCC CTGTGCCAAC GCCCGACATG
CGTCTGCAAG ACACGCCACT GCCGCGCATG CCGCTGCCTG CTTCGAGTAT CGACCTCGAC
GGTTGCAAAC GGCGCTTCCT CTACCAGTAT GTCTACCAGT TGTACGATGA CCTGTCGCCC
TTTTTGCGCA TGCATCAGAC GATCCGCGAA TGCGCCAAAA TTCTGACGGA ACAGGCGCGC
AGGGATGCTC TTCCTGCTGA TGAAGCCGGG CTGCGCACCC TGGTGTTCGG TCAGTTGCAA
CGCTATGAAC TCGATAGTGT ACTCTACGCC GATGACTACG CTGCCGAGGC GCTCCGGCAC
GCACGGACCG TGTGGGACGA TCTGCGCACC GGACGGCTCT CGCCCGAGTG TGTGGACCGG
CGGGTAATCG TGCGACGACC TGCCGGGACG ATTGAGGTGC GGATCGATCG TGAGGACATG
CAGGACGGCG TGACGCGCTG GGTATGGGTG CGTCCAGGGA TGCCGCGCAA TGACGATCAC
CTGGCAGAGC GGGTGATGCT GTACGCTCTG GCGCGCCAGG AGACGCCCGA TCCACCTGAT
GAGATCGTCA TTGCCTACAC CGGAACCGGT GACGTGCGCC GCGCTACGCC CCGCGCACAG
GTATTGGCGA ACCACACAGA AAAGATCGAT CGTCTGCTGG AAGCCATGCG CGCGCGACAT
TGGGAGCCGT TGTTCGGTCC ACAGTGTGAT ACGTGTCCGT TTAATCTGAT CTGCCCGGTA
TAG
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| Protein sequence | MSVHSQHIRA FARDIRRSYL ERSGGAPAHP LPLDDLAETL WGLTVVPTMT LAAGIQGKVE
PELQVIRVRR DLPPTRQRFV VAHEIGHVAL EGLTAGPFRD TDDTLDERAV GEDADETAVR
TYNTRERRER EANLFALELL APAEDIWQAV QQPDWSIETL AAHFAVSSDA LCAQLANVCL
LEPPVSPEAS VNARTTLCIL DQEQQAAVDA PLPLLLAAGP GTGKTRSIVA KYVSLVRQGV
DPASILALTF SNRAAEEMRE RIVAALRHEA PRLVGRIEIS TFHSWGLNVL RIYGARLGLP
VDARLLDTAD LFILLSKRLN DLRLAYFKDV REPTRHLLTI IQAISRIKDE LWSPDEFSRL
ADVEAQRLIA AAERDYPGAT RKAIEARERA ARQAAALREL AQVYPRYEAM LREAGALDYG
DLIVLPAQAL RDHPAIAADL RRRYHYLLVD EFQDINYASG ELIRLLDGGR GRVWAVGDAW
QSIYRFRGAS AANLDEFPRY YPNARIFYLT RNYRSLQPIL DAGAAVMSGD PRAAERPPLV
AQRNGGGAHT VVEWAAPRSQ DEYAALARDI LRRVRLRNRW LASGCAARCR MPRSGTMRRV
ARRPPLSTRQ WRFGDHAILC RTHEQAGAVA AVLETHGIPV DYINDVFDTP GVKDALAVCA
QVGATNSAGL LRALTMPEHR LDPADLNRLV DLARRSQQAL PRAARDPQII ACLSEAAQQT
LARIRIIVEA LEGEGDAWQV LTAYLFRHSR AMRARLIHAA QGHIRAQREL AALGQLLAIA
RNFVRAAAPD ECDASHFIDY IRALRAAGVR PRSSIGGQVD AVRVMTVHAA KGLEFPIVYV
PGLQEGRFPV RGNQRGIPLP AGLIRGPIES EEQEERYLLY VAMTRARDRL VLSRSLTCGD
GAKSAERSSL LPGDGQGNGA PWRVRFIESA VNCPVPTPDM RLQDTPLPRM PLPASSIDLD
GCKRRFLYQY VYQLYDDLSP FLRMHQTIRE CAKILTEQAR RDALPADEAG LRTLVFGQLQ
RYELDSVLYA DDYAAEALRH ARTVWDDLRT GRLSPECVDR RVIVRRPAGT IEVRIDREDM
QDGVTRWVWV RPGMPRNDDH LAERVMLYAL ARQETPDPPD EIVIAYTGTG DVRRATPRAQ
VLANHTEKID RLLEAMRARH WEPLFGPQCD TCPFNLICPV
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