| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4169 |
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| Symbol | |
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| ID | 5541680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5394790 |
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| End bp | 5396223 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640896280 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001434218 |
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| Protein GI | 156744089 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00575947 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00428587 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAACGTG GTCGCTTGAT CACCGGCATT GTTACAGGAT TGACGGCTGT GGCGCTGGCG
GCGTGCGGCG CGCAACCGGC TGCTCCCGCG CCGACTGCCA GTGCGCCGGC AGCATCTCAG
CCGACTGTTG TTGTGCCAAC ACCGGTGCCG CTACCGACCG GCCAGCCAAT TCAGTTGGGC
ATTACCGGCA TTGGTGAAGT CAAGAGTGCG CAGGATGCCA ACCTGTCGTT CCAGGTGCAG
GGCACGGTAG CGCAGGTCTT TGTCAAAGAA GGGGATTTCG TCAAGAAAGG CGACCTGCTC
GCCATTCTCG ACACCCGTGC TTTCGATCAG CAACTCGAAC AGGCGAAGGC GGCGCTCGCC
AACGCGCTGG CGCAGGAAGC CGCGCTGACC GAGGACCCTC GCCAGACGGA TCTCAATGCG
GCGCGCGCGG CAGTGGCGCA GGCGCAGGCG GCGCTTGAGG CGCTTCAGCG TGGACCGAAG
GAACAGGACC TTCGCATGGC GGAAGCGGCG CTGGCGGCAG CCGAAGCCAA CCTGCAAGCC
ACCCGTGATC GTCTGTCGTT CGCAAAGACG CAGGCGGAAA TACAGATGGA GCAGGCGGCT
GCCGCGTTGA CACAGGCGCA GGCGCGCTAT GCACAGGCAA AGTACAACTG GGAGTATGCG
CGCGATACCG GCAACGATCC GATCGTGCCC GAAGTCGCCG CGCCGAATGG TCAGCGTGTG
CCGAATAAAC TGAGCGATGG TCAGCGCGAA AACTATTATG CCCAATTCGT CCAGGCGGAA
GCCGGATTGC GCCAGGCGGA AAAGGCGCTC GAACTGGCGG TCAAAGGCGC TGAGAGCGCG
CGTCAGGCGG AAGTGACCGG CATTCAGGCA GCCGAGGCGC AGGTCGAACA GGCGCGCCTG
ACCCTCGAAA AATTGCGACT GCCGCCCGAC CCGGATCGCC TTGCGGCAGC CAGAGCTGCG
CTAGCGCAGG CGCGCGCCCA GGAAGCGCGC CTCATCCCCG ACCCGCGTGA CTCGCAGAAG
GCGGCGGCGC GCGCTGGCGT CGAGCAGGCG CAGGCGGCGC TGACGCTGGC GCAGATTAAC
CGCGAACGCG CTGAACTGCG CGCGCCGTTC GATGGCGTCG TTTCGATTGT CTCCATCGAT
CCGGGCGATC CGAGTGTGAC CCAGGGGCTG CCGGCGATCC AGATCGTCGA TATGAGCAAA
CTGTATGTCG ATGTTCAGAT CAGCGATGTG GACATCGCGC GGGTGCGGGA GGGTCAATCG
GCAAAGATCT CGATCAGTAG CATCCCGGAC CGTGAGTACA CCGGCAAGGT CGAGTATGTT
GCGCCAACTG CTACGGTGCA GGGTCTCTCG CGCAGCTATC GGGTGCGTAT CGCGCTCGAC
GACATCACCG GACTGCGGGC AGGCATGAGC GCGCGGGTCG ATATTCTGGA GTAG
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| Protein sequence | MKRGRLITGI VTGLTAVALA ACGAQPAAPA PTASAPAASQ PTVVVPTPVP LPTGQPIQLG
ITGIGEVKSA QDANLSFQVQ GTVAQVFVKE GDFVKKGDLL AILDTRAFDQ QLEQAKAALA
NALAQEAALT EDPRQTDLNA ARAAVAQAQA ALEALQRGPK EQDLRMAEAA LAAAEANLQA
TRDRLSFAKT QAEIQMEQAA AALTQAQARY AQAKYNWEYA RDTGNDPIVP EVAAPNGQRV
PNKLSDGQRE NYYAQFVQAE AGLRQAEKAL ELAVKGAESA RQAEVTGIQA AEAQVEQARL
TLEKLRLPPD PDRLAAARAA LAQARAQEAR LIPDPRDSQK AAARAGVEQA QAALTLAQIN
RERAELRAPF DGVVSIVSID PGDPSVTQGL PAIQIVDMSK LYVDVQISDV DIARVREGQS
AKISISSIPD REYTGKVEYV APTATVQGLS RSYRVRIALD DITGLRAGMS ARVDILE
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