| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4156 |
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| Symbol | |
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| ID | 5541667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5378759 |
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| End bp | 5379730 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640896267 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001434205 |
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| Protein GI | 156744076 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.625918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.530435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCGC CTGTCTCGCT CGATCTTGTA CTTCCGATTG GCGCCGCGCT GCTGGCAGGA
CTGGCAGTTC TGACGCTGAT ATTCGCACTC CACAGCCTGG CAGCGCGCGA CACCGGCGTC
GATAGCCGGA TCGCCGCCTA CCTGGGAGGC GGTCGTGCGG AGCGCAGTAG CACACTTAAC
GATCAACAGA TCGCCGAACG ACTGAACGAG GTCATCAAAC GGCAGAGTTT CGCTTCCCGG
ATCGAACACG ACCTTGCCGC CGCCAGTCTG CCGCTCACCG TGCCGGAATA TCTGCTGATG
CGCATTGCTG TGCCGCTGAT CGCCACATTG CTGGCGTTGC TGATCTGGCG CCAGGCGTTG
ATTGCACCGG CAGCACTGAT TATCGGTCAC CTGGCGCTCT CTTTCTGGAT GCGCATCCGC
CGTCAGCGTC GCAAGCAGGC GTTCAGCGAT CAGTTGCCCG AAACGCTTGA TTTGATCACC
GCATCGATGC GCGGCGGGTT CAGCCTGGTG CAGTCGCTTG CCAATGTTGC CGGTGATGTG
CAGGAACCGA TGCGCACCGA ACTGCGGCGC GTGTTCCAGG AAGTGCAACT CGGCTTGAGC
ATCACGCAGG CGCTCGACAA TCTGGTGCAG CGCATGGAGA GCACCGACCT CGACCTGGTA
GTGACGGCGA TCAAAATTCA CGCCCGCGTT GGCGGCAATC TGGGGCAGAT TCTCGAGAAC
ATCAGCACCA CTATGCGCGA ACGCGCCAAA CTACGGCGCG AGGTGCGCGT CATCACCTCA
ATGCAGCGCA TCTCCAGTTA TGTTATTGGC GCCTTGCCTT TCGCGCTGGC GTTGATCATT
TTCACGATTA ATCCGACGTA TATGATGCGG CTGTTTCAGC CGGGGTTGAT CCTTTGCATC
CCGATTGGTG CGTTCGTTTC ATCGGTCGCC GGTTTTCTCA TCATTCGGAA GATCGTTGAT
GTGAGGATCT GA
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| Protein sequence | MDSPVSLDLV LPIGAALLAG LAVLTLIFAL HSLAARDTGV DSRIAAYLGG GRAERSSTLN
DQQIAERLNE VIKRQSFASR IEHDLAAASL PLTVPEYLLM RIAVPLIATL LALLIWRQAL
IAPAALIIGH LALSFWMRIR RQRRKQAFSD QLPETLDLIT ASMRGGFSLV QSLANVAGDV
QEPMRTELRR VFQEVQLGLS ITQALDNLVQ RMESTDLDLV VTAIKIHARV GGNLGQILEN
ISTTMRERAK LRREVRVITS MQRISSYVIG ALPFALALII FTINPTYMMR LFQPGLILCI
PIGAFVSSVA GFLIIRKIVD VRI
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