| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4146 |
|---|
| Symbol | |
|---|
| ID | 5541657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5367656 |
|---|
| End bp | 5369137 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640896257 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_001434195 |
|---|
| Protein GI | 156744066 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0502455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCG CCGATATGGT GGACGCCCTG CGACGGGTGG TTGGACCGCG CGCCGTCATC
GATGATGCCG CGACGTTGCT GACGTATGAG GCTGATGGGT GTGTGCTGGA TACGCACGCG
CCCAATGTGG TTGTGTTGCC TGCCACCACT GAGGAAACCG CTGAAGTGGT GCGGATCGCC
AATCGCGCAG GTATGCCGAT TGTGCCGCGC GGCGCGGGCA CCGGTCTCTC CGGCGGAGCA
ACGCCGATCC ATGGCGGAAT TGTCATTTCG ACGGCGCGGA TGGAACGGGT GCTGGAGGTG
GATGTGCGCA ATCGGCGGGT GCGCGTGCAG CCAGGGGTCA TTAACTGGGA ACTGTCTCAG
TACCTGTCTC CATACGGCTA TGCGTTCATG CCTGACCCGT CATCGCAGAA GGCATGCACA
ATCGGCGGGA ATATTGCCAA TAACAGTGGC GGTCCGCATT GCCTCAAATA TGGCATGACG
ACGAACCATG TGCTGGCGTT GCGCGTGGTG TTGCCCGACG GCAGCGTTAT CTGGACGGGT
GATGGGCGGC AGGATGGCAT CGGGTACGAT CTGGCAGGGG TGTTGACCGG CAGTGAAGGC
GCCTGCGGCA TCATCACCGA GGCGTGGGTG CGGATGACCC GTCTGCCGGA ATCGCTGCGC
GTGGTGCTGG CGCTCTTCCC GGATATTCCG TCCGCGTCGC AGACGGTCTC GACCGTTATT
GCGCGCGGGT TTCTCCCGGC TGCCCTGGAA ATGATGGACC AGTTGGCGAT CCGCGCTGTG
AATGGTATGT ACCGCCTGGG GCTGCCGGAA AGTGCTGGCG CGGCGCTGTT GATTGAACTC
GATGGCGTGA ACGATGGGCT GGATGATTTG CTTGCCGAAG TCACCGGTAT TTGCCGCGAT
CTTGGCGCGA TGGAGGTGCG CCCCGCAAAA ACAGCCGCTG AGCAGGCACA GGTCTGGGCA
GCGCGCAAAA ATGCCTTCGG AGCAATGGGG CGGCTGGCGC CGACGTACTA CCTGGTCGAT
ACGGTGGTGC CGCGCACGCG GTTGCCGGCG ACGCTAGCGC GCGTCGGCGA GGTGTCGCGC
GATTATCGCC TGCCTATTGC GAATGTGTTT CACGCAGGCG ACGGCAATCT GCATCCGCTC
ATCCTGTTCG ACCGCCGCGA CAAAAGCCAG CTTGAACGAG CGCTCAACGC TGCTACCGAC
ATTCTGCGTG AGTCGATCAA TCAGGGAGGG GTGATCAGCG GCGAGCATGG TATTGGCGTT
GAGAAGCGCG ATTATATGGA TCTGCTGTTC ACTACCGATG ATCTGGCGGC GATGGCGGGG
CTGAAGCGCA GTTTTGATCC GCGCGAGATG TTCAATCCCG GCAAAATCTT TCCGAAAGGC
GTTGGTTGCG GCGAACTGGC TGCGCTGCGG CAGCGCGGAT TACCGGCTGC CGATCTGATG
GGTACAGATA CGAACAGCGT ACCGGCGGGG ACATGGTTGT AA
|
|---|
| Protein sequence | MNRADMVDAL RRVVGPRAVI DDAATLLTYE ADGCVLDTHA PNVVVLPATT EETAEVVRIA
NRAGMPIVPR GAGTGLSGGA TPIHGGIVIS TARMERVLEV DVRNRRVRVQ PGVINWELSQ
YLSPYGYAFM PDPSSQKACT IGGNIANNSG GPHCLKYGMT TNHVLALRVV LPDGSVIWTG
DGRQDGIGYD LAGVLTGSEG ACGIITEAWV RMTRLPESLR VVLALFPDIP SASQTVSTVI
ARGFLPAALE MMDQLAIRAV NGMYRLGLPE SAGAALLIEL DGVNDGLDDL LAEVTGICRD
LGAMEVRPAK TAAEQAQVWA ARKNAFGAMG RLAPTYYLVD TVVPRTRLPA TLARVGEVSR
DYRLPIANVF HAGDGNLHPL ILFDRRDKSQ LERALNAATD ILRESINQGG VISGEHGIGV
EKRDYMDLLF TTDDLAAMAG LKRSFDPREM FNPGKIFPKG VGCGELAALR QRGLPAADLM
GTDTNSVPAG TWL
|
|---|
| |